Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AF91_RS13785 Genome accession   NZ_CP007122
Coordinates   2796009..2796605 (+) Length   198 a.a.
NCBI ID   WP_003662304.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei N1115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2791009..2801605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AF91_RS13765 (AF91_14265) gyrA 2791510..2794131 (+) 2622 WP_003662307.1 DNA gyrase subunit A -
  AF91_RS13770 (AF91_14270) deoC 2794236..2794940 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  AF91_RS13775 (AF91_14275) ssb 2795123..2795554 (+) 432 WP_003662305.1 single-stranded DNA-binding protein -
  AF91_RS13780 (AF91_14280) rpsF 2795682..2795978 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  AF91_RS13785 (AF91_14285) ssb 2796009..2796605 (+) 597 WP_003662304.1 single-stranded DNA-binding protein Machinery gene
  AF91_RS13790 (AF91_14290) rpsR 2796692..2796928 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  AF91_RS13795 (AF91_14295) - 2797375..2798295 (-) 921 WP_003574021.1 IS30 family transposase -
  AF91_RS13800 (AF91_14300) - 2798425..2799903 (+) 1479 WP_016366189.1 cytochrome ubiquinol oxidase subunit I -
  AF91_RS13805 (AF91_14305) cydB 2799896..2800915 (+) 1020 WP_003662302.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21148.91 Da        Isoelectric Point: 4.9056

>NTDB_id=116375 AF91_RS13785 WP_003662304.1 2796009..2796605(+) (ssb) [Lacticaseibacillus paracasei N1115]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=116375 AF91_RS13785 WP_003662304.1 2796009..2796605(+) (ssb) [Lacticaseibacillus paracasei N1115]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCCAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment