Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABNR97_RS09385 Genome accession   NZ_OZ021676
Coordinates   1777150..1777728 (+) Length   192 a.a.
NCBI ID   WP_232017972.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772150..1782728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS09355 - 1773100..1773720 (+) 621 WP_010358934.1 L-threonylcarbamoyladenylate synthase -
  ABNR97_RS09360 - 1773744..1773872 (-) 129 WP_010358932.1 hypothetical protein -
  ABNR97_RS09365 - 1773882..1774325 (-) 444 WP_003689406.1 Rrf2 family transcriptional regulator -
  ABNR97_RS09370 - 1774499..1774867 (+) 369 WP_003689404.1 hemerythrin domain-containing protein -
  ABNR97_RS09375 - 1774912..1776066 (+) 1155 WP_010358927.1 NnrS family protein -
  ABNR97_RS09380 - 1776124..1776996 (-) 873 WP_003693577.1 prephenate dehydrogenase -
  ABNR97_RS09385 pilA 1777150..1777728 (+) 579 WP_232017972.1 nitrilase-related carbon-nitrogen hydrolase Machinery gene
  ABNR97_RS09390 - 1777866..1778024 (+) 159 WP_154235854.1 hypothetical protein -
  ABNR97_RS09395 - 1777998..1778786 (-) 789 WP_348676519.1 opacity family porin -
  ABNR97_RS09400 - 1779331..1779735 (-) 405 Protein_1828 pilin -
  ABNR97_RS09405 - 1779918..1780793 (+) 876 WP_003689397.1 DMT family transporter -
  ABNR97_RS09410 - 1780909..1782116 (+) 1208 Protein_1830 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20298.55 Da        Isoelectric Point: 5.0264

>NTDB_id=1162937 ABNR97_RS09385 WP_232017972.1 1777150..1777728(+) (pilA) [Neisseria gonorrhoeae isolate SGC-23-001]
MKRLVARAAEQGADWVLLPEYWVLMGANDTGKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEARGIDIVLAD
TAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALAS
DRPVPVRYIGVGEGIDDLRPFDARAFVDALLD

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1162937 ABNR97_RS09385 WP_232017972.1 1777150..1777728(+) (pilA) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGAAACGCCTGGTCGCACGGGCGGCGGAGCAGGGTGCGGATTGGGTGCTGCTGCCCGAATATTGGGTGCTGATGGGCGC
AAACGATACCGGCAAACTCGCACTTGCCGAGCCTTTGGGCGGCGGACGCTTTCAGACGGCATTGAGCGAAACGGCGAAAG
AATGCGGCGTGGTGCTGTTCGGCGGAACCGTGCCGCTGCAAAGCCCCGAAGCGCGCGGGATCGACATCGTGCTTGCCGAC
ACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAAAAAGCCATTCC
CGGCGCGCCGCACGAAATCATCGTCGTACTCGATGCCAATATCGGGCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACG
ACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCC
GACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATAGACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGT
GGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

Carbon-nitrogen hydrolase (CN_hydrolase)

(2-102)

SRP54-type protein, GTPase domain (SRP54)

(67-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

79.769

90.104

0.719

Multiple sequence alignment