Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABNR97_RS06205 Genome accession   NZ_OZ021676
Coordinates   1195495..1195812 (+) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190495..1200812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS06180 - 1191093..1192745 (-) 1653 WP_103195361.1 LTA synthase family protein -
  ABNR97_RS06185 gmhB 1192888..1193451 (+) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  ABNR97_RS06190 - 1193481..1194224 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABNR97_RS06195 - 1194221..1194910 (+) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  ABNR97_RS06200 - 1194974..1195165 (-) 192 WP_014580443.1 hypothetical protein -
  ABNR97_RS06205 pilE 1195495..1195812 (+) 318 WP_003697861.1 pilin Machinery gene
  ABNR97_RS06210 - 1195778..1196464 (+) 687 WP_348676518.1 pilin -
  ABNR97_RS06215 - 1197007..1197441 (+) 435 Protein_1222 pilin -
  ABNR97_RS06220 - 1197765..1198151 (+) 387 Protein_1223 pilin -
  ABNR97_RS06225 lpxC 1198644..1199567 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ABNR97_RS06230 - 1199696..1200100 (+) 405 Protein_1225 pilin -
  ABNR97_RS06235 - 1200161..1200502 (+) 342 Protein_1226 pilin -
  ABNR97_RS06240 - 1200625..1200743 (+) 119 Protein_1227 pilin -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=1162921 ABNR97_RS06205 WP_003697861.1 1195495..1195812(+) (pilE) [Neisseria gonorrhoeae isolate SGC-23-001]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1162921 ABNR97_RS06205 WP_003697861.1 1195495..1195812(+) (pilE) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment