Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABNR97_RS04200 Genome accession   NZ_OZ021676
Coordinates   806332..807135 (+) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 801332..812135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS04170 holA 801345..802343 (-) 999 WP_003690761.1 DNA polymerase III subunit delta -
  ABNR97_RS04175 lptE 802345..802824 (-) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  ABNR97_RS04180 pgeF 802876..803655 (-) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  ABNR97_RS04185 - 803808..804032 (+) 225 WP_225577482.1 hypothetical protein -
  ABNR97_RS04190 - 804109..805056 (+) 948 Protein_822 bile acid:sodium symporter family protein -
  ABNR97_RS04195 rluD 805209..806333 (-) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABNR97_RS04200 comL 806332..807135 (+) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  ABNR97_RS04205 comA 807205..809424 (-) 2220 WP_010359837.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNR97_RS04210 - 809456..809731 (+) 276 WP_153707850.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=1162911 ABNR97_RS04200 WP_003687645.1 806332..807135(+) (comL) [Neisseria gonorrhoeae isolate SGC-23-001]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1162911 ABNR97_RS04200 WP_003687645.1 806332..807135(+) (comL) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGACCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment