Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABNR90_RS06465 Genome accession   NZ_OZ021673
Coordinates   1218319..1221504 (+) Length   1061 a.a.
NCBI ID   WP_348676075.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213319..1226504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS06440 - 1214064..1214573 (-) 510 WP_003687293.1 protein disulfide oxidoreductase -
  ABNR90_RS06450 apbC 1214947..1216026 (+) 1080 WP_050301745.1 iron-sulfur cluster carrier protein ApbC -
  ABNR90_RS06455 - 1216557..1217000 (+) 444 WP_252295643.1 hypothetical protein -
  ABNR90_RS06460 - 1217124..1217438 (+) 315 WP_195845361.1 hypothetical protein -
  ABNR90_RS06465 pilC 1218319..1221504 (+) 3186 WP_348676075.1 PilC family type IV pilus tip adhesin Machinery gene
  ABNR90_RS06470 - 1222355..1222639 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  ABNR90_RS06475 carA 1223354..1224487 (+) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  ABNR90_RS06480 - 1224541..1224825 (+) 285 WP_003687282.1 VOC family protein -
  ABNR90_RS06485 - 1224753..1224920 (+) 168 WP_003687280.1 glyoxalase -
  ABNR90_RS06490 - 1225083..1225472 (+) 390 WP_003687278.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 1061 a.a.        Molecular weight: 116579.88 Da        Isoelectric Point: 9.9134

>NTDB_id=1162872 ABNR90_RS06465 WP_348676075.1 1218319..1221504(+) (pilC) [Neisseria gonorrhoeae isolate SGC-23-002]
MNKTLKRRVFRHTALYTAILMFSHTGGGGGAMAQTHQYAIIMNERKQPEVKWKDQYNQSALKDKSRERTFSHTSQKNGLG
ITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYTGIRCGSTKDCPKL
TYKTRFSFDNPDLLKTRGGLDRHTEPSRENSPIYKLKDYPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVY
TTEDHRISLSNWQQETTAMAYYLNAKLHLLDKKGIKDITGKTVRLGVLKPSIDVKTQNTGLSGILNFWSKWDIKDNGQIP
VKLGLPEVKAGRCINEPNPNKNTQAPSPALTAPALWFGPGQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGRH
SLAALNARDIKSREPNFNSRQTVIRLPGGVYRIGPTRNGIVGLNGNDGKNDTFGIYKDRLVTPEVDEWAKVLLPWTVRYY
GNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVGGYLATSANDGMVHLFKRNGTNQRGYE
LKLSYIPGTMERKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYALDLTK
ADSNNPTAVSLFDVKNGNNGNNSNNSNNSNNSNNSNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKTIDDQQNKTAL
YVYDLESSGTLIKKIDVPGGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSSDNPSSWTVRTIFEGTKPITSAPA
VSRLADKRVVIFGTGSDLSEEDVVGKDQQYIYGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENKILFLINNKASGGSA
DKGWVVKLREGERVTVKPTVVLRTAFVTIRKYTGNDKCDAQTAILGINTADGGALTPRSARPIVPGDQVAQYSGHKKMNG
KSIPIGCMWKNSKTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLD
SLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3186 bp        

>NTDB_id=1162872 ABNR90_RS06465 WP_348676075.1 1218319..1221504(+) (pilC) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATACCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGAAGG
ATCAATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACGGCCTCGGC
ATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGC
CACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGA
TTCATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACACCGGTATCCGTTGCGGAAGTACCAAAGACTGTCCCAAACTT
ACCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGCTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAG
CCGCGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGTGTGTCTTTCAATTTGGGCGGCGAGGGTACCG
CCAAAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTAT
ACGACAGAAGACCACCGTATTTCCCTTAGCAACTGGCAGCAAGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCT
GCACCTGCTGGACAAAAAAGGGATTAAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATG
TGAAGACACAAAATACGGGGCTTAGCGGCATTCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCG
GTCAAGCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACGAACCGAACCCCAATAAGAATACCCAAGCCCCTTC
GCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGCCCTGGGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCTA
CCTACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGGCAT
TCCCTCGCCGCTTTGAATGCGCGGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCC
GGGCGGCGTGTACCGGATCGGCCCGACTCGCAACGGGATCGTGGGTTTGAATGGCAATGACGGCAAAAACGACACTTTCG
GCATCTACAAGGACAGGCTCGTCACACCTGAGGTCGACGAGTGGGCAAAAGTGCTGCTGCCTTGGACGGTCCGGTATTAC
GGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATA
CCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCG
GCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAAACCAACGAGGCTACGAA
CTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCG
CACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACC
AAGACAAGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCGTATGCCTTGGATTTGACCAAA
GCCGACAGCAATAACCCGACCGCCGTTTCCCTGTTTGATGTCAAAAATGGCAATAATGGCAATAATAGCAATAATAGCAA
TAATAGCAATAATAGCAATAATAGCAATAATAGCGTGCAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCC
ACAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGACTAAAACCATTGACGACCAACAAAATAAAACCGCGCTG
TATGTGTATGATTTGGAAAGCAGCGGTACGCTGATTAAAAAAATCGATGTACCCGGCGGCAAGGGCGGGCTTTCGTCCCC
CACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGATCGCGGCGGGAATATGTACCGCTTTG
ATTTGAGCAGCGACAATCCGTCCAGCTGGACTGTACGCACTATTTTCGAAGGCACAAAACCGATTACTTCCGCGCCCGCC
GTTTCCCGACTGGCAGACAAACGCGTGGTCATCTTCGGTACGGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTAAGGA
TCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAG
GCGGGCTGCTCGAGCAAACGCTTACGAAGGAAAATAAAATCTTGTTCCTGATAAATAATAAGGCATCCGGCGGATCGGCC
GATAAAGGCTGGGTAGTGAAATTGAGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGT
GACCATCCGGAAATATACGGGTAATGACAAATGCGACGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCG
CATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGGTGACCAGGTTGCGCAATATTCCGGCCATAAGAAAATGAACGGC
AAGTCCATCCCCATAGGCTGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAA
TGTGCGTTACCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCA
AAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGAC
AGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(522-873)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.897

100

0.707

Multiple sequence alignment