Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABNR90_RS06365 Genome accession   NZ_OZ021673
Coordinates   1200317..1200625 (+) Length   102 a.a.
NCBI ID   WP_269460796.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1195317..1205625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS06330 - 1196489..1197109 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  ABNR90_RS06335 - 1197308..1197684 (-) 377 Protein_1232 transposase -
  ABNR90_RS06340 - 1197993..1198118 (-) 126 Protein_1233 IS110 family transposase -
  ABNR90_RS06345 - 1198342..1198974 (+) 633 WP_269460797.1 pilin -
  ABNR90_RS06350 - 1199092..1199478 (+) 387 Protein_1235 pilin -
  ABNR90_RS06355 - 1199519..1199869 (+) 351 Protein_1236 pilin -
  ABNR90_RS06360 - 1199910..1200260 (+) 351 Protein_1237 pilin -
  ABNR90_RS06365 pilE 1200317..1200625 (+) 309 WP_269460796.1 pilin Machinery gene
  ABNR90_RS06370 lpxC 1201292..1202215 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ABNR90_RS06375 - 1202344..1202796 (+) 453 Protein_1240 pilin -
  ABNR90_RS06380 - 1202762..1203085 (+) 324 Protein_1241 pilin -
  ABNR90_RS06385 - 1203676..1204443 (+) 768 Protein_1242 opacity family porin -
  ABNR90_RS06390 - 1204457..1204627 (+) 171 WP_003704136.1 hypothetical protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10944.34 Da        Isoelectric Point: 9.1386

>NTDB_id=1162871 ABNR90_RS06365 WP_269460796.1 1200317..1200625(+) (pilE) [Neisseria gonorrhoeae isolate SGC-23-002]
MASASKIIGKYVKQVEVKNGVVTAQMASTGVNKEIQDKKLSLWAKREDGSVKWFCGQPVTRTEANAKAGTDDVAKADTTG
KDKEIDTKHLPSTCRDESSAGT

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1162871 ABNR90_RS06365 WP_269460796.1 1200317..1200625(+) (pilE) [Neisseria gonorrhoeae isolate SGC-23-002]
GTGGCATCCGCTTCAAAAATCATAGGCAAATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCCAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCACCGAAGCCAACGCCAAAGCCGGCACCGACGACGTCGCCAAAGCCGACACCACCGGC
AAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75

98.039

0.735
  pilE Neisseria gonorrhoeae MS11

70.213

92.157

0.647

Multiple sequence alignment