Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABNR90_RS05860 Genome accession   NZ_OZ021673
Coordinates   1107992..1108852 (+) Length   286 a.a.
NCBI ID   WP_003689814.1    Uniprot ID   A0AA44U9R8
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1102992..1113852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS05845 dapD 1103502..1104323 (-) 822 WP_003689804.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  ABNR90_RS05850 pgi 1104533..1106176 (-) 1644 WP_003689806.1 glucose-6-phosphate isomerase -
  ABNR90_RS05855 pilG 1106686..1107918 (+) 1233 WP_003689811.1 type 4 pilus assembly protein PilG Machinery gene
  ABNR90_RS05860 pilD 1107992..1108852 (+) 861 WP_003689814.1 A24 family peptidase Machinery gene
  ABNR90_RS05865 coaE 1108849..1109481 (+) 633 WP_003689816.1 dephospho-CoA kinase -
  ABNR90_RS05870 - 1109474..1109683 (+) 210 WP_003696096.1 DNA gyrase inhibitor YacG -
  ABNR90_RS05875 pilF 1109769..1111445 (-) 1677 WP_003689817.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABNR90_RS05885 - 1111783..1112229 (-) 447 WP_003689818.1 DUF441 domain-containing protein -
  ABNR90_RS05890 - 1112233..1113207 (-) 975 WP_003689819.1 polyprenyl synthetase family protein -
  ABNR90_RS05895 rplU 1113431..1113739 (+) 309 WP_003691838.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31332.34 Da        Isoelectric Point: 8.9561

>NTDB_id=1162867 ABNR90_RS05860 WP_003689814.1 1107992..1108852(+) (pilD) [Neisseria gonorrhoeae isolate SGC-23-002]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1162867 ABNR90_RS05860 WP_003689814.1 1107992..1108852(+) (pilD) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(134-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

100

100

1
  pilD Vibrio cholerae strain A1552

44.792

100

0.451
  pilD Vibrio campbellii strain DS40M4

45.652

96.503

0.441
  pilD Acinetobacter baumannii D1279779

47.727

92.308

0.441
  pilD Acinetobacter nosocomialis M2

47.727

92.308

0.441

Multiple sequence alignment