Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AABJ29_RS09460 Genome accession   NZ_OZ004876
Coordinates   1817699..1818118 (+) Length   139 a.a.
NCBI ID   WP_311201957.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate 632_2023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1812699..1823118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ29_RS09445 glmS 1813256..1815094 (+) 1839 WP_338361975.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  AABJ29_RS09450 metG 1815210..1817264 (+) 2055 WP_003699323.1 methionine--tRNA ligase -
  AABJ29_RS09455 - 1817339..1817647 (-) 309 Protein_1841 NAD(P)-dependent oxidoreductase -
  AABJ29_RS09460 pilE 1817699..1818118 (+) 420 WP_311201957.1 pilin Machinery gene
  AABJ29_RS09465 - 1818171..1818506 (+) 336 Protein_1843 pilin -
  AABJ29_RS09470 - 1818563..1818856 (+) 294 Protein_1844 pilin -
  AABJ29_RS09475 - 1818877..1819187 (+) 311 Protein_1845 pilin -
  AABJ29_RS09480 thiC 1819676..1821577 (-) 1902 WP_197097900.1 phosphomethylpyrimidine synthase ThiC -
  AABJ29_RS09490 - 1822175..1823050 (+) 876 WP_003686971.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15075.97 Da        Isoelectric Point: 8.9608

>NTDB_id=1162641 AABJ29_RS09460 WP_311201957.1 1817699..1818118(+) (pilE) [Neisseria gonorrhoeae isolate 632_2023]
MASPTDIKGKYVESVTVEKGVVTAKMLSSGVNNEIKNKKLSLWAKRQDGSVKWFCGQPVTRGNAKDDTVADAADKDKIDT
KHLPSTCRCFQIGSVKWFCGQPVTRDNADNDDVNADNGGKGKIDTKHLPSTCRDTSSAK

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1162641 AABJ29_RS09460 WP_311201957.1 1817699..1818118(+) (pilE) [Neisseria gonorrhoeae isolate 632_2023]
GTGGCATCCCCCACCGACATCAAAGGCAAATATGTTGAAAGCGTTACGGTCGAAAAAGGCGTCGTTACCGCCAAAATGCT
TTCAAGCGGCGTAAACAATGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGGCAACGCCAAAGACGACACCGTTGCCGACGCCGCCGACAAAGACAAAATCGACACC
AAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGACAA
CGCCGACAACGACGACGTCAACGCCGACAACGGCGGCAAAGGCAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTG
ATACGTCATCTGCCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

78.824

61.151

0.482
  pilE Neisseria gonorrhoeae strain FA1090

73.864

63.309

0.468

Multiple sequence alignment