Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AABJ29_RS09330 Genome accession   NZ_OZ004876
Coordinates   1792811..1793110 (+) Length   99 a.a.
NCBI ID   WP_338361973.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate 632_2023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787811..1798110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ29_RS09300 - 1788391..1789842 (-) 1452 WP_033909671.1 spermidine synthase -
  AABJ29_RS09305 - 1789865..1790485 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  AABJ29_RS09310 - 1790684..1791060 (-) 377 Protein_1812 transposase -
  AABJ29_RS09315 - 1791369..1791494 (-) 126 Protein_1813 IS110 family transposase -
  AABJ29_RS09320 - 1792060..1792425 (+) 366 Protein_1814 pilin -
  AABJ29_RS09325 - 1792482..1792754 (+) 273 Protein_1815 pilin -
  AABJ29_RS09330 pilE 1792811..1793110 (+) 300 WP_338361973.1 pilin Machinery gene
  AABJ29_RS09335 - 1793101..1793442 (+) 342 Protein_1817 pilin -
  AABJ29_RS09340 - 1793885..1794259 (+) 375 Protein_1818 pilin -
  AABJ29_RS09345 lpxC 1794753..1795676 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  AABJ29_RS09350 - 1795804..1796202 (+) 399 Protein_1820 pilin -
  AABJ29_RS09355 - 1796242..1796592 (+) 351 Protein_1821 pilin -
  AABJ29_RS09360 - 1796632..1796982 (+) 351 Protein_1822 pilin -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10825.31 Da        Isoelectric Point: 10.3038

>NTDB_id=1162639 AABJ29_RS09330 WP_338361973.1 1792811..1793110(+) (pilE) [Neisseria gonorrhoeae isolate 632_2023]
MASSSSIKGKYVKEVEVKNGVVTATMLSSGVNKEIKNKRLSLWGRRENGSVKWFCGQPVKRTAKDGTDDVAKDGKDNEKI
NTKHLPSTCRDESSLPGIT

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1162639 AABJ29_RS09330 WP_338361973.1 1792811..1793110(+) (pilE) [Neisseria gonorrhoeae isolate 632_2023]
GTGGCATCTTCTTCATCAATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAATGCT
TTCAAGCGGCGTAAACAAAGAAATCAAAAACAAAAGACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCACCGCCAAAGACGGCACCGACGACGTCGCCAAAGACGGCAAAGACAACGAAAAAATC
AACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCGTTGCCGGGCATTACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

75.556

90.909

0.687
  pilE Neisseria gonorrhoeae strain FA1090

65.957

94.949

0.626

Multiple sequence alignment