Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   U4992_RS10010 Genome accession   NZ_OY843610
Coordinates   2295731..2297092 (+) Length   453 a.a.
NCBI ID   WP_071340575.1    Uniprot ID   -
Organism   Maribacter dokdonensis isolate 44847     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2290731..2302092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4992_RS09980 - 2291183..2291992 (-) 810 WP_321825860.1 glycogen/starch synthase -
  U4992_RS09985 panC 2292095..2292940 (+) 846 WP_058104845.1 pantoate--beta-alanine ligase -
  U4992_RS09990 panD 2292949..2293299 (+) 351 WP_058104844.1 aspartate 1-decarboxylase -
  U4992_RS09995 - 2293303..2294267 (+) 965 Protein_1976 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  U4992_RS10000 - 2294297..2295439 (+) 1143 WP_074670395.1 alpha/beta hydrolase -
  U4992_RS10005 - 2295488..2295658 (+) 171 WP_305521994.1 hypothetical protein -
  U4992_RS10010 radA 2295731..2297092 (+) 1362 WP_071340575.1 DNA repair protein RadA Machinery gene
  U4992_RS10015 - 2297198..2298238 (-) 1041 WP_321825866.1 aldo/keto reductase -
  U4992_RS10020 - 2298309..2299073 (-) 765 WP_321825867.1 exodeoxyribonuclease III -
  U4992_RS10025 - 2299201..2299722 (+) 522 WP_321825868.1 DUF3575 domain-containing protein -
  U4992_RS10030 - 2299750..2301840 (+) 2091 WP_321825869.1 TonB-dependent receptor domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49573.23 Da        Isoelectric Point: 7.2051

>NTDB_id=1162106 U4992_RS10010 WP_071340575.1 2295731..2297092(+) (radA) [Maribacter dokdonensis isolate 44847]
MAKTKTAFFCQNCGTQYAKWVGQCSACKQWNTVVEEVVQKEEKSSWKTPSQSSKRVSKPLLVNEISIEKEVRLNTFDLEF
NRVLGGGLVPGALVLLGGEPGVGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRADRIHPNSETCFILTETKTQNIFKQI
EATEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLISKNDDGLSGTAIAATVEGMRPLLIEIQALVSTAVYGTP
QRSTTGYNVKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIPIDKGICFAAEVGLAGEI
RPVQRVEQRILEAEKLGYETIIISKNNKIGLKSTKIRILLASKIEEVAGNLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1162106 U4992_RS10010 WP_071340575.1 2295731..2297092(+) (radA) [Maribacter dokdonensis isolate 44847]
ATGGCCAAAACAAAAACTGCCTTTTTTTGTCAAAATTGCGGCACCCAATATGCAAAATGGGTAGGGCAATGTTCTGCTTG
TAAACAATGGAACACTGTTGTTGAAGAGGTTGTACAAAAAGAAGAAAAATCTAGTTGGAAAACCCCTTCACAAAGCTCAA
AAAGAGTTTCAAAACCTCTTTTGGTCAACGAAATTAGTATTGAAAAAGAAGTTCGTTTAAATACTTTTGATCTTGAATTC
AACAGAGTTCTTGGTGGCGGATTAGTACCTGGAGCATTGGTGCTCTTAGGTGGGGAACCTGGTGTAGGAAAGAGTACACT
ACTACTTCAAATTGCCTTAAAACTACCGTATAAAACGTTATATGTTTCAGGCGAAGAAAGCCAAAAACAAATTAAAATGC
GTGCTGACAGAATTCACCCGAATAGTGAAACCTGTTTTATACTTACAGAAACCAAAACTCAAAATATATTTAAGCAAATT
GAAGCTACAGAACCAGATATTGTAGTTATTGATTCTATACAAACGCTGCACTCCGATTATATTGAATCTGCTGCCGGAAG
TATCTCTCAAATTAGGGAATGCACTGCGGAACTTATAAAATTTGCCAAAGAGACCAATACACCTGTCATTTTAATTGGGC
ATATTACAAAAGACGGTTCTATTGCCGGACCAAAGATTTTAGAGCATATGGTTGATACCGTTCTTCAATTTGAAGGCGAC
CGTAATTATGTTTACAGAATTCTAAGGTCACTAAAAAATAGATTTGGATCCACAGCAGAACTTGGTATTTATGAAATGCA
AGGTAGTGGCCTAAGAGAAGTCAACAATCCGTCAGAGGTATTAATATCCAAAAATGATGATGGTTTAAGTGGTACTGCCA
TTGCAGCTACCGTTGAAGGCATGCGGCCACTGCTTATAGAAATTCAAGCTTTGGTAAGTACCGCGGTTTATGGAACACCT
CAACGTTCAACTACGGGCTATAATGTTAAAAGACTAAACATGCTCTTGGCCGTTTTAGAAAAACGTGCTGGCTTCAAACT
AGGTGCAAAAGATGTTTTCTTGAATATTACCGGTGGCATATCCGTAGACGACCCTGCTATTGATTTGGCAGTTATCGCCG
CAATTTTGTCGAGCAATGAAGACATACCTATTGACAAAGGCATTTGTTTTGCTGCAGAAGTTGGGCTTGCAGGTGAAATT
AGACCTGTACAAAGAGTTGAACAACGAATTCTTGAAGCAGAAAAACTAGGCTATGAAACAATTATTATTTCAAAAAATAA
TAAAATAGGTCTTAAATCAACCAAAATAAGAATTCTATTGGCTTCTAAAATTGAAGAAGTTGCCGGTAACTTATTTGGTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.457

96.689

0.488
  radA Streptococcus mitis NCTC 12261

48.132

100

0.483
  radA Streptococcus pneumoniae Rx1

48.132

100

0.483
  radA Streptococcus pneumoniae D39

48.132

100

0.483
  radA Streptococcus pneumoniae R6

48.132

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.483
  radA Streptococcus mitis SK321

47.912

100

0.481

Multiple sequence alignment