Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   U9J37_RS14595 Genome accession   NZ_OY808998
Coordinates   80380..81561 (+) Length   393 a.a.
NCBI ID   WP_005471312.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 75380..86561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS14580 (VDT1_2971) - 76214..77197 (+) 984 WP_005471374.1 CobW family GTP-binding protein -
  U9J37_RS14585 (VDT1_2972) clcA 77609..79009 (+) 1401 WP_005471274.1 H(+)/Cl(-) exchange transporter ClcA -
  U9J37_RS14590 (VDT1_2973) - 79122..80096 (+) 975 WP_043886801.1 TDT family transporter -
  U9J37_RS14595 (VDT1_2974) cqsA 80380..81561 (+) 1182 WP_005471312.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  U9J37_RS14600 (VDT1_2975) cqsS 81593..83662 (-) 2070 WP_005471184.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44204.48 Da        Isoelectric Point: 7.2827

>NTDB_id=1162004 U9J37_RS14595 WP_005471312.1 80380..81561(+) (cqsA) [Vibrio sp. 16 isolate VDT1]
MNTLNLCPPSPEFINKKIEHHLAKLVDCHQNGKHLVMGAQPNDDDIVLQSNDYLDLANHPEIIHRHAEAILEKRHTSVMS
GVFLQSEDRKPALERKLADYTGFSSCLLSQSGWSANLALLQTICDSETQVYIDFFAHMSLWEGARIAGANIHPFMHNNVR
HLQKLIRRHGPGLVLIDSVYSTIGTVAPLIDIVLMSKENGCALVIDESHSLGTHGKHGEGLLKSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNRANECIPFVGYPAVFSSAMLPYEIERLDKTLEIIRQSDHQREHLRKISRYLKQQLTQIGVTIRSESQ
IVTLETGDERNTENVRDFLESKHVFGAVFCQPATTPNKNIIRFSLNSSTTQRQLDQIIAAVQSARQQPNLYIL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1162004 U9J37_RS14595 WP_005471312.1 80380..81561(+) (cqsA) [Vibrio sp. 16 isolate VDT1]
ATGAATACGCTAAACCTATGCCCTCCATCTCCAGAATTCATAAACAAAAAGATAGAACATCACTTAGCGAAGCTCGTTGA
CTGCCATCAAAACGGTAAACATTTGGTGATGGGTGCCCAGCCCAACGATGACGATATTGTGCTGCAAAGCAATGATTATC
TTGATCTCGCGAACCACCCCGAGATCATTCACCGTCACGCCGAAGCCATTCTCGAAAAACGGCACACATCCGTCATGTCT
GGCGTGTTCCTGCAAAGTGAAGATAGAAAACCTGCGCTCGAGCGCAAACTGGCAGACTACACAGGATTTAGCTCCTGTTT
ATTATCTCAATCCGGTTGGTCAGCAAACCTAGCCTTACTGCAAACCATCTGTGATAGCGAAACCCAGGTGTATATTGACT
TCTTTGCCCACATGTCACTTTGGGAAGGGGCAAGAATTGCAGGGGCAAACATCCACCCGTTTATGCACAACAATGTCCGT
CACTTACAAAAGCTGATTCGCCGCCACGGACCCGGTTTAGTCTTGATTGATTCGGTGTATAGCACAATAGGTACGGTTGC
CCCTCTCATCGATATTGTCTTAATGTCGAAGGAGAATGGCTGCGCACTGGTTATAGACGAATCCCATTCCCTTGGCACTC
ATGGCAAGCATGGTGAAGGTTTGCTCAAGAGCCTCAAACTCAGCCACCAAGTTGATTTTATGACCGCAAGTTTAGCGAAG
ACGTTTGCCTATCGTGCGGGAGCGATTTGGTGCAACAATCGAGCAAATGAGTGCATTCCATTTGTTGGCTACCCAGCGGT
ATTTAGCTCAGCCATGTTGCCCTATGAAATTGAGAGACTCGACAAAACCTTAGAGATCATTCGCCAAAGTGACCACCAGC
GTGAGCACTTGCGCAAAATCAGTCGTTACTTGAAACAACAACTGACGCAAATTGGCGTAACGATTCGTAGCGAGTCACAA
ATCGTCACGCTTGAAACGGGTGATGAGAGAAACACAGAAAACGTACGAGATTTCCTAGAGAGTAAACACGTATTTGGCGC
CGTTTTTTGTCAGCCAGCAACCACTCCTAACAAAAACATCATTCGTTTCTCATTAAACAGCAGCACCACACAACGACAAC
TGGACCAGATCATCGCTGCGGTTCAATCGGCCCGTCAGCAACCCAACCTATACATTCTCTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-381)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

60.519

97.964

0.593

Multiple sequence alignment