Detailed information NTG1162002

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: U9J37_RS14075
• Genome accession: NZ_OY808997
• Coordinates: 3032231..3035617 (-)
• Length: 1128 a.a.
• NCBI ID: WP_043887193.1
• Uniprot ID: -
• Organism: Vibrio sp. 16 isolate VDT1
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3027231..3040617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U9J37_RS14060 (VDT1_2863)	-	3027708..3028733 (-)	1026	WP_005474254.1	ABC transporter permease	-
U9J37_RS14065 (VDT1_2864)	-	3028736..3029722 (-)	987	WP_005474325.1	ABC transporter permease	-
U9J37_RS14070 (VDT1_2865)	-	3029895..3031577 (-)	1683	WP_005474245.1	ABC transporter substrate-binding protein	-
U9J37_RS14075 (VDT1_2866)	chiS	3032231..3035617 (-)	3387	WP_043887193.1	response regulator	Regulator
U9J37_RS14080 (VDT1_2867)	rsmC	3035852..3036874 (-)	1023	WP_005474252.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
U9J37_RS14085 (VDT1_2868)	-	3036946..3038037 (-)	1092	WP_038137559.1	AI-2E family transporter	-
U9J37_RS14090 (VDT1_2870)	hemL	3038297..3039589 (-)	1293	WP_005474311.1	glutamate-1-semialdehyde 2,1-aminomutase	-
U9J37_RS14095 (VDT1_2871)	erpA	3039850..3040191 (+)	342	WP_038137912.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127031.66 Da
• Isoelectric Point: 5.4215

>NTDB_id=1162002 U9J37_RS14075 WP_043887193.1 3032231..3035617(-) (chiS) [Vibrio sp. 16 isolate VDT1]
MFKLYRKQRFKRLQNTLMFAFLALSITPLTITAIFFLQSHTTDLQEQSTSHLVSVRDSKQQQVVDYLYAKESEVMGFVRS
ELAYASGGRFYGLVNAFQSLGLDIESAREYAQKRYIQGSGDQIKTSILPQSNIFNGTERYRLLHKRYHWAYLELLKRSDF
DDILLVDRDGNVTYSIFKYDNFGTNLLTGRYKDANLGQSFKKLRDLVTEKRKANEDFTPVLISDFTQEQGKSVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLISDTNNIASMKTLLVGPDYQSRTLAYQKEDIELSNEVVTLALNGLTNVGTYTNTAGEE
TIAAYSPVSLKGIDWALVVEVPESVAFARVHQLEKLFVAAMLIAIVLVVMASHYLSNFITSPLLKLTWAAEKVSAGDMDA
DMINMERKDEIGRLAVSFERMQRSIREKIQLIKQQNEELESNLQLIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPITADHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTHLVLELSSHLLGNKPLRI
INQVPEEPVWVSADPQRLEQVLYNLIGNAIKYTTEGKIVISATVVDNNIRVQVVDTGQGIPADQLDHIFEPLIQAGNDAS
RYRQGAGLGLSISRQLIELMKGSLYVSSQPMVGTTFSFTLPIATEEQIASASQFDSPHFQAPESTDIELAEVTNVPVNPD
GPLLLVVDDEPVNLRVLDSFLRLEGYRVQTAKDGLEAFEKLEAEKPELVLLDIMMPGMSGYQVCEKLRQDYDHAQLPVIM
LTALNQADDRLRGFEAGANDYLSKPFNKQELAARIRAHLTASKAEQRRIENQQLQLELKQRALVEASLLETQGRLLEQLE
TAPEAIICVREDNKIRFANEAASKLFKRSTEQLKRSSAEELIAPKFLNITQDHYCGTIDVYVEDVRQHLSTDILKLPEGS
GLRSIYIFNVGGSINASRINNLETAIEALSSYAFDGDKAKLQELKELGGEFTRLADKVSSDSKPKQEVMREILVDAMTNA
LEYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSLDYILEHCNEQSPQRAHIEGLRN
KLQHLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=1162002 U9J37_RS14075 WP_043887193.1 3032231..3035617(-) (chiS) [Vibrio sp. 16 isolate VDT1]
ATGTTTAAGTTGTATCGCAAACAAAGATTCAAGCGTCTTCAGAATACGCTGATGTTCGCGTTTCTTGCGCTAAGCATTAC
GCCGCTGACTATTACAGCTATCTTTTTCTTACAATCTCACACCACCGACCTACAAGAGCAGAGCACGTCGCACCTTGTCT
CTGTGCGCGATAGCAAGCAGCAACAAGTGGTGGATTACCTGTATGCTAAAGAATCCGAGGTGATGGGCTTTGTCCGCTCC
GAGCTCGCGTATGCCAGTGGCGGACGTTTTTACGGCTTAGTCAATGCCTTCCAAAGCTTGGGGCTAGATATTGAAAGTGC
GCGCGAATATGCACAAAAGCGTTACATTCAAGGATCTGGCGATCAAATCAAAACGTCTATCCTGCCTCAATCAAACATTT
TCAACGGAACAGAACGTTATCGTCTACTGCACAAACGCTACCACTGGGCGTATCTAGAGCTTTTGAAGCGCTCCGATTTT
GACGATATTCTGTTGGTCGATAGAGATGGTAATGTCACCTATTCAATCTTCAAATATGACAATTTCGGTACTAACCTACT
TACTGGGCGCTACAAGGATGCCAACTTAGGTCAATCATTTAAGAAGTTGCGTGATTTGGTTACAGAAAAACGCAAAGCGA
ATGAAGACTTCACCCCAGTATTGATTTCCGACTTCACTCAAGAACAAGGAAAGTCGGTTGCTTGGTTGGGAGCACCGATT
ATTCAGCAAGGATATTTGCACAGCTACGCGATGTTCCGCTTGCCTAACAATGGCATCACCAAACTGATTTCAGACACCAA
CAATATTGCCTCAATGAAGACGTTATTGGTGGGACCTGATTACCAGTCACGAACATTGGCTTATCAAAAAGAAGATATCG
AATTAAGTAACGAAGTTGTCACTCTCGCGCTGAACGGTTTGACCAACGTCGGGACTTATACCAACACTGCCGGCGAAGAA
ACCATCGCGGCATACAGCCCAGTATCGCTAAAAGGCATTGATTGGGCGTTGGTTGTTGAAGTACCAGAAAGTGTCGCCTT
CGCGCGCGTTCACCAACTCGAAAAACTGTTTGTTGCCGCCATGCTGATTGCGATTGTACTCGTGGTCATGGCGTCTCACT
ACCTATCCAACTTTATTACTTCCCCATTGTTAAAATTGACGTGGGCTGCAGAAAAAGTCTCAGCTGGAGACATGGATGCA
GACATGATCAACATGGAAAGAAAGGATGAAATTGGACGTTTGGCTGTAAGCTTTGAACGGATGCAACGTTCTATTCGTGA
AAAAATTCAATTGATCAAACAGCAAAATGAAGAACTAGAGAGCAACTTACAGCTTATCCAAAAACAGAATGATGAGTTGC
AGTTAGCCAACAAACTGAAAGATGAGTTTCTCGCGACGACCTCTCATGAGCTGCGTACACCACTGCACGGTATGGTGGGG
ATCGCTGAAGCACTCATTTCAGGCGCTAATGGCCCTATTACCGCCGATCACAAGTACCAACTCGATATCATCATCAGCAG
CGGACAACGCTTGGCGACCCTCGTCGATGACTTACTCGACTACCATAAAATGCGTTATGGCAACTTAGATATCGAAACCA
GCGCGGTCGATTTATCTGGCTCAACCCACTTGGTACTTGAGCTCTCTTCTCATCTGCTGGGCAACAAGCCACTGCGCATT
ATCAATCAAGTGCCAGAAGAACCGGTTTGGGTGAGTGCAGACCCTCAGCGTCTTGAGCAAGTCCTATACAACCTGATTGG
CAACGCGATCAAATACACTACAGAAGGGAAAATTGTTATTTCTGCAACTGTGGTTGACAACAACATTCGCGTTCAAGTCG
TCGATACTGGCCAGGGTATTCCTGCAGACCAACTCGACCACATCTTTGAACCGCTGATTCAAGCAGGCAACGATGCCAGT
CGCTACAGACAAGGAGCTGGCCTAGGATTGTCGATTAGCCGACAACTCATTGAGCTAATGAAAGGCTCTTTGTATGTCAG
CAGTCAACCAATGGTTGGAACCACGTTTAGCTTTACGCTTCCGATAGCAACAGAAGAACAAATTGCTTCAGCGAGTCAAT
TCGACAGCCCACATTTCCAAGCACCAGAAAGCACAGATATTGAACTTGCCGAGGTAACCAACGTGCCAGTGAACCCTGAT
GGACCACTATTACTGGTTGTCGACGATGAACCTGTCAACTTACGGGTCTTGGATAGTTTCCTCAGATTAGAAGGTTACCG
TGTTCAAACAGCCAAAGATGGTTTAGAAGCCTTCGAAAAACTGGAAGCAGAGAAGCCGGAGCTGGTATTACTCGATATTA
TGATGCCAGGCATGAGTGGCTATCAAGTATGTGAGAAACTCCGCCAAGATTACGATCACGCACAGCTGCCTGTCATTATG
CTAACCGCGCTAAATCAAGCCGACGACCGTCTACGTGGCTTCGAGGCGGGCGCGAACGACTATTTGTCTAAGCCGTTCAA
TAAACAGGAGCTAGCCGCTCGTATTCGCGCGCACCTAACCGCGAGTAAAGCCGAACAGCGCAGGATTGAGAATCAACAGT
TACAACTAGAACTCAAGCAGCGTGCTTTAGTCGAAGCGAGTCTGCTTGAAACGCAAGGACGACTTCTCGAACAGCTTGAA
ACCGCGCCTGAAGCCATTATTTGTGTTCGAGAGGACAACAAAATACGTTTTGCCAACGAGGCAGCTTCAAAACTGTTCAA
GCGTTCGACGGAGCAACTTAAGCGTTCATCGGCCGAAGAGCTTATCGCACCGAAATTCCTCAATATCACTCAGGATCACT
ACTGTGGAACCATAGACGTGTATGTTGAAGATGTTAGACAGCACCTTTCTACAGACATTCTCAAACTGCCAGAAGGCTCT
GGGCTGCGCTCCATTTATATATTCAATGTCGGTGGAAGCATCAATGCCAGTCGAATCAATAATCTTGAAACGGCGATTGA
AGCCCTATCAAGCTATGCTTTCGATGGGGACAAAGCCAAGCTGCAAGAGCTCAAAGAGCTCGGTGGCGAGTTCACTCGTC
TTGCGGATAAAGTATCTTCAGACAGCAAACCCAAACAAGAGGTGATGCGTGAAATATTGGTCGATGCAATGACTAACGCA
CTGGAGTACTGGGAAAGCGTTACAGGAGAAACCAAGTTTGCCTTTGCAGAGAAGAGCGGTTTGTGGCGCGTTTATCTTGA
CCGGAGCACGCTTCAAACCCGAACGCTTGATAAATACTTGCGTATCGAAACCCTACCTAAAACCCCTCGATGGAGAACGG
TATTGAGCTCTCTAGATTACATTCTGGAGCACTGCAACGAACAAAGCCCACAACGCGCTCATATTGAAGGGCTGCGCAAT
AAGCTACAACACTTACTGACAAGTTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• HAMP domain (HAMP) (375-427)

• PAS fold (PAS) (876-924)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-836)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	79.61	100	0.796