Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   U9J37_RS13910 Genome accession   NZ_OY808997
Coordinates   2988480..2989094 (-) Length   204 a.a.
NCBI ID   WP_005475688.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983480..2994094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS13900 (VDT1_2831) aceF 2984771..2986669 (+) 1899 WP_005475689.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  U9J37_RS13905 (VDT1_2832) lpdA 2986938..2988365 (+) 1428 WP_005475672.1 dihydrolipoyl dehydrogenase -
  U9J37_RS13910 (VDT1_2833) opaR 2988480..2989094 (-) 615 WP_005475688.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  U9J37_RS13915 (VDT1_2834) hpt 2989396..2989926 (+) 531 WP_038137618.1 hypoxanthine phosphoribosyltransferase -
  U9J37_RS13920 (VDT1_2835) can 2989997..2990665 (-) 669 WP_005475685.1 carbonate dehydratase -
  U9J37_RS13925 (VDT1_2836) - 2991024..2992694 (+) 1671 WP_005475683.1 SulP family inorganic anion transporter -
  U9J37_RS13930 (VDT1_2837) - 2992855..2993772 (+) 918 WP_005475691.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23522.76 Da        Isoelectric Point: 6.2239

>NTDB_id=1162001 U9J37_RS13910 WP_005475688.1 2988480..2989094(-) (opaR) [Vibrio sp. 16 isolate VDT1]
MDSIAKRPRTRLSPQKRKQQLMEISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKDNLENLTSAMVNLVANDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHDPA
DLATLFHGICYSLFVQANRVQNTDALSKLTQSYLDMLCIYKRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1162001 U9J37_RS13910 WP_005475688.1 2988480..2989094(-) (opaR) [Vibrio sp. 16 isolate VDT1]
ATGGACTCAATAGCGAAAAGACCGCGCACGCGTCTGTCTCCGCAAAAACGTAAACAGCAACTGATGGAGATTTCTCTAGA
GGTATTTGCTCGTCGTGGTATCGGACGTGGAGGTCACGCAGATATTGCTGAAATCGCTCAGGTTTCAGTCGCAACCGTAT
TTAACTACTTCCCGACTCGTGAAGATCTCGTTGATGACGTACTAAACTATGTCGTGCGTCAGTTCTCGAATTTTCTATCG
GACAATATTGATTTAGATCTGCACGCGAAAGACAACCTAGAGAACCTCACATCGGCAATGGTGAACCTAGTTGCCAATGA
TTGCCACTGGCTAAAAGTGTGGTTTGAGTGGAGTGCATCAACGCGCGATGAAGTATGGCCACTGTTTGTCACCACTAACC
GTACAAATCAGCTTCTAGTACAAAACATGTTTATCAAAGCGATTGAACGTGGTGAAGTCTGTGACCAGCATGATCCAGCC
GATCTTGCGACACTGTTCCACGGCATTTGTTACTCGCTGTTTGTACAAGCAAATCGTGTACAAAACACAGATGCACTGTC
TAAGCTAACCCAAAGTTACTTGGATATGCTGTGCATCTACAAACGTGACCACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83.824

100

0.838
  hapR Vibrio cholerae C6706

76.382

97.549

0.745
  hapR Vibrio cholerae strain A1552

76.382

97.549

0.745

Multiple sequence alignment