Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   U9J37_RS07095 Genome accession   NZ_OY808997
Coordinates   1608947..1610341 (-) Length   464 a.a.
NCBI ID   WP_005473429.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603947..1615341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS07060 (VDT1_1436) moaE 1604639..1605100 (-) 462 WP_005473316.1 molybdopterin synthase catalytic subunit MoaE -
  U9J37_RS07065 (VDT1_1437) moaD 1605102..1605347 (-) 246 WP_005473432.1 molybdopterin synthase sulfur carrier subunit -
  U9J37_RS07070 (VDT1_1438) moaC 1605344..1605823 (-) 480 WP_005473427.1 cyclic pyranopterin monophosphate synthase MoaC -
  U9J37_RS07075 (VDT1_1439) moaB 1605836..1606348 (-) 513 WP_005473434.1 molybdenum cofactor biosynthesis protein B -
  U9J37_RS07080 (VDT1_1440) moaA 1606434..1607423 (-) 990 WP_038213434.1 GTP 3',8-cyclase MoaA -
  U9J37_RS07085 (VDT1_1442) - 1607727..1608614 (+) 888 WP_005473350.1 YvcK family protein -
  U9J37_RS07090 (VDT1_1443) luxU 1608600..1608944 (-) 345 WP_190277913.1 quorum-sensing phosphorelay protein LuxU -
  U9J37_RS07095 (VDT1_1444) luxO 1608947..1610341 (-) 1395 WP_005473429.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  U9J37_RS07100 (VDT1_1446) uvrB 1610602..1612632 (-) 2031 WP_005473426.1 excinuclease ABC subunit UvrB -
  U9J37_RS07110 (VDT1_1448) rsxA 1613506..1614087 (+) 582 WP_005476911.1 electron transport complex subunit RsxA -
  U9J37_RS07115 (VDT1_1449) rsxB 1614087..1614668 (+) 582 WP_005476909.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51722.08 Da        Isoelectric Point: 5.2579

>NTDB_id=1161973 U9J37_RS07095 WP_005473429.1 1608947..1610341(-) (luxO) [Vibrio sp. 16 isolate VDT1]
MQEHTDNQNAKYLLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLYAVKKKN
PDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKASKLKNEADYPGNQGYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYYRLYVIPLHLPPLRE
RGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQLQNVLRNVVVLNNGKEIDLSMLPPPLNKPTENQI
RVDLPVSDEFSVQDIFPLWLTEKRAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQSWNLKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1161973 U9J37_RS07095 WP_005473429.1 1608947..1610341(-) (luxO) [Vibrio sp. 16 isolate VDT1]
ATGCAAGAACACACAGATAATCAGAACGCAAAATATTTGCTGATGGTTGAGGATACCGCGTCTGTCGCGGCTCTTTATCG
TTCCTATCTAACCCCGCTTTGCATCGACATCAATATTGTCGGTACAGGACGGGATGCAATCGAAAGCCTTAACTTTCGAA
CCCCCGACCTTATTCTCCTTGATTTGCGTCTTCCCGATATGACAGGGATGGATGTACTTTACGCGGTGAAAAAGAAAAAC
CCAGACGTGCCAGTTGTATTTATGACCGCGCATGGCTCTATCGATACGGCGGTAGAGGCGATGCGTCACGGCGCACAGGA
TTTCTTAATTAAGCCCTGTGAAGCCGACCGACTGCGTGTCACCGTCAACAATGCATTACGCAAAGCGAGTAAGTTGAAAA
ACGAGGCTGACTATCCAGGTAACCAGGGCTATCAAGGGTTTATCGGTAGTAGTCAGACAATGCAGGCGGTTTATCGAACC
ATTGACTCTGCGGCGTCGAGTAAAGCCAGTATCTTCATCACCGGTGAGAGTGGTACGGGTAAAGAGGTGTGTGCAGAAGC
GATCCATGCAACCAGCAAGCGCGGTGATAAACCGTTTATCGCGATTAACTGTGCTGCGATTCCAAAAGACTTGATTGAAA
GTGAACTGTTCGGTCACGTTAAAGGGGCATTTACCGGTGCCGCGACCGATCGTCAAGGAGCGGCTGAACTGGCCGATGGC
GGAACTCTGTTTCTTGATGAGTTGTGTGAAATGGATCTCGACTTACAGACCAAGCTTTTGCGTTTTATTCAGACAGGCAC
CTTCCAGAAGGTGGGATCGTCTAAAATGAAAAGCGTGGATGTTCGTTTTGTGTGCGCGACCAACCGTGACCCTTGGAAAG
AAGTGGAGGAGGGGCGTTTTAGGGAAGACTTGTACTACCGTTTGTATGTTATCCCGCTTCACTTACCCCCATTGCGCGAG
CGCGGTGACGACATCATTGAAATTGCCTATTCGCTGCTGGGCTTTATGTCAAAAGAAGAAGGTAAGGATTTCGTCCGCTT
ATCTCCGCAGGTAGTAGATCGATTTGCCAGCTACGAGTGGCCAGGAAATGTGCGCCAATTGCAAAATGTGTTGCGTAATG
TTGTGGTGCTCAATAATGGCAAGGAAATTGATTTGTCTATGTTGCCTCCGCCATTAAACAAACCGACGGAGAACCAAATT
CGGGTTGATTTGCCTGTGTCTGATGAGTTTTCAGTGCAAGACATTTTCCCACTTTGGTTAACGGAAAAGCGAGCCATTGA
GCAAGCTATTAAGGCATGTGATGGCAATATCCCTAAAGCGGCGGGCTATTTGGATGTCAGTCCATCGACCATCTATCGCA
AGCTGCAATCATGGAATTTGAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.143

96.336

0.849

Multiple sequence alignment