Detailed information NTG1161966

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: U9J37_RS03635
• Genome accession: NZ_OY808997
• Coordinates: 804555..805979 (-)
• Length: 474 a.a.
• NCBI ID: WP_039484820.1
• Uniprot ID: -
• Organism: Vibrio sp. 16 isolate VDT1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 799555..810979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U9J37_RS03615 (VDT1_0734)	-	800959..802164 (+)	1206	WP_005470627.1	HD-GYP domain-containing protein	-
U9J37_RS03620 (VDT1_0735)	cdd	802214..803101 (-)	888	WP_005470699.1	cytidine deaminase	-
U9J37_RS03625 (VDT1_0736)	-	803357..804034 (-)	678	WP_005470688.1	CidB/LrgB family autolysis modulator	-
U9J37_RS03630 (VDT1_0737)	-	804034..804399 (-)	366	WP_005470740.1	CidA/LrgA family protein	-
U9J37_RS03635 (VDT1_0738)	sbcB	804555..805979 (-)	1425	WP_039484820.1	exodeoxyribonuclease I	Machinery gene
U9J37_RS03640 (VDT1_0739)	-	806124..806918 (-)	795	WP_043886693.1	TrmB family transcriptional regulator	-
U9J37_RS03645 (VDT1_0740)	-	806971..807867 (-)	897	WP_322413898.1	ROK family protein	-
U9J37_RS03650 (VDT1_0741)	-	807867..809648 (-)	1782	WP_322413899.1	glycoside hydrolase family 13 protein	-
U9J37_RS03655 (VDT1_0742)	-	809667..810500 (-)	834	WP_005470771.1	sugar ABC transporter permease	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54614.90 Da
• Isoelectric Point: 4.7874

>NTDB_id=1161966 U9J37_RS03635 WP_039484820.1 804555..805979(-) (sbcB) [Vibrio sp. 16 isolate VDT1]
MQHEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPTDYLPAPEAALITGITPQTAVAKGLSEP
EFIAKIHEQLATPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGVEWPENDEGFI
SFKLEHLSKANGIEHENAHDAMADVIATIEMAKKIKAAQPKLFDYFLSMRHKRKLNDLIDIVNMTPLMHVSGMLGRECNY
TSWMVPVAWHPTNQNAVIMVDLAKDPQPLFDLDVEQLNERLYTKHSELADDELPVPVKLVHLNKCPILAPAKTLTAENAA
NIGINREQCLENLARLRQTPEIREKLIGLYSIDREYAKDNDVDSMLYDGFFSPADKASMDIIRQTDPNNLAALDISFNDD
RIAPLLFRYRARNFPATLDESEQQRWANHCRDYFESRIEDYMLNLENLVHEHESDEKKLAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=1161966 U9J37_RS03635 WP_039484820.1 804555..805979(-) (sbcB) [Vibrio sp. 16 isolate VDT1]
ATGCAACATGAGCATCAACCTACGTTTTTCTTTTTCGACTATGAAACGTGGGGAACCAGCCCTGCAAAGGATCGTCCTTG
CCAATTTGCAGGTGTGCGTACCGATATGGATTTCAACATCATTGGTGAGCCTCTGGTTATCTATTGTCAACCACCGACAG
ATTACTTACCCGCACCAGAAGCGGCATTAATCACCGGTATCACTCCTCAAACTGCTGTTGCCAAAGGATTGTCTGAGCCA
GAGTTCATCGCCAAGATCCATGAGCAGCTCGCTACTCCAAACACCATTAACCTGGGTTACAACAGCATTCGATTCGACGA
TGAAGTGACTCGCTATACGTGTTATCGCAACTTTATCGACCCCTACGCTTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ATCTTCTCGACGTGATGCGCGCTTGTTATGCACTACGCCCAGAAGGCGTTGAGTGGCCAGAAAATGACGAAGGGTTTATC
AGCTTTAAGCTAGAGCACCTGTCTAAAGCCAACGGGATTGAACACGAAAATGCCCACGATGCGATGGCCGACGTGATTGC
TACTATTGAAATGGCGAAGAAGATCAAAGCTGCGCAACCTAAGCTGTTTGATTATTTCCTCAGCATGCGCCACAAACGCA
AGCTCAACGATCTGATTGATATTGTTAACATGACGCCATTAATGCATGTCTCGGGCATGTTGGGTCGAGAGTGTAATTAC
ACCAGTTGGATGGTTCCTGTGGCTTGGCATCCAACCAACCAAAATGCGGTGATCATGGTCGATTTGGCCAAAGACCCACA
ACCCCTGTTCGATTTGGATGTTGAGCAGCTCAATGAGCGCCTGTACACCAAACACTCGGAGCTGGCAGACGATGAACTTC
CGGTCCCGGTAAAACTGGTCCACCTTAATAAGTGTCCGATACTTGCACCTGCGAAAACCTTAACCGCAGAAAACGCCGCG
AATATTGGTATCAACCGAGAACAATGCCTTGAGAACTTGGCTCGTCTGCGTCAAACCCCTGAAATACGCGAAAAGCTGAT
TGGCTTATACAGCATCGACCGGGAATACGCGAAAGATAACGATGTCGATAGCATGCTTTATGACGGATTCTTTTCTCCGG
CGGATAAAGCCTCGATGGACATTATTCGCCAAACCGATCCAAATAACTTAGCGGCGCTTGATATCTCGTTTAATGATGAC
CGTATTGCACCGCTGCTATTCCGCTACCGCGCACGCAACTTCCCTGCCACTTTAGATGAGTCAGAACAGCAACGCTGGGC
AAATCATTGCCGAGACTACTTCGAAAGTCGTATTGAAGACTATATGCTCAATTTGGAAAACTTAGTTCACGAACATGAAA
GTGATGAAAAGAAGCTAGCTATTTTAAAATCCGTTTATCAATACGTACAAAAGCTAGTATCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.436	99.789	0.783