Detailed information NTG1161878

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACLMBM_RS06900
• Genome accession: NZ_OY781972
• Coordinates: 1549594..1550796 (-)
• Length: 400 a.a.
• NCBI ID: WP_321275827.1
• Uniprot ID: -
• Organism: MAG: Thiomicrorhabdus indica isolate 830269dd-2df0-462d-a2dc-71ec7b730e8f
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1544594..1555796

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLMBM_RS06865 (U2908_RS06850)	-	1545166..1545951 (+)	786	WP_321275824.1	type III pantothenate kinase	-
ACLMBM_RS06880 (U2908_RS06865)	fabA	1546316..1546831 (+)	516	WP_130538205.1	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	-
ACLMBM_RS06885 (U2908_RS06870)	fabB	1546835..1548055 (+)	1221	WP_130538204.1	beta-ketoacyl-ACP synthase I	-
ACLMBM_RS06890 (U2908_RS06875)	-	1548163..1548774 (-)	612	WP_321275825.1	hypothetical protein	-
ACLMBM_RS06895 (U2908_RS06880)	-	1548761..1549576 (-)	816	WP_321275826.1	hypothetical protein	-
ACLMBM_RS06900 (U2908_RS06885)	pilA	1549594..1550796 (-)	1203	WP_321275827.1	signal recognition particle-docking protein FtsY	Machinery gene
ACLMBM_RS06905 (U2908_RS06890)	-	1550993..1552423 (+)	1431	WP_321275828.1	pitrilysin family protein	-
ACLMBM_RS06910 (U2908_RS06895)	-	1552424..1553752 (+)	1329	WP_321275829.1	pitrilysin family protein	-
ACLMBM_RS06915 (U2908_RS06900)	-	1553977..1555764 (-)	1788	WP_321275830.1	lysophospholipid acyltransferase family protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 43428.16 Da
• Isoelectric Point: 4.5453

>NTDB_id=1161878 ACLMBM_RS06900 WP_321275827.1 1549594..1550796(-) (pilA) [MAG: Thiomicrorhabdus indica isolate 830269dd-2df0-462d-a2dc-71ec7b730e8f]
MFGFFRRNKKQDEATQAEQQESQELNEAVTKAPTPAPTETDTEAPTPAPTETVTEAPTPAPTETVTEAPTPAPTEIVTEE
EPKKKGFFARLKEGLSKTRKTFTDSLANLVLGKKEIDDELLEDLEMILLTADVGIDATDRIIQNLTDQVSRKELSDPQAL
IASLKVQLNQILEPINRPLEIDEFLKTTGGPYVILMVGINGVGKTTTIGKLAKKFQNEGKSIMLAAGDTFRAAAVEQLET
WGERNNVPVIAQKTGADSAAVIFDAMQSAKAKNIDVLIADTAGRLHTQSNLMEELKKVKRVIAKVDDTAPHEVMLVIDAG
TGQNALNQTKQFHEAVGVSGITLTKLDGTAKGGIVYALAEQTQVPIRYIGIGEQIDDLRPFNSEDFTNALFTQNETASKT

Nucleotide

• Length: 1203 bp

>NTDB_id=1161878 ACLMBM_RS06900 WP_321275827.1 1549594..1550796(-) (pilA) [MAG: Thiomicrorhabdus indica isolate 830269dd-2df0-462d-a2dc-71ec7b730e8f]
ATGTTTGGTTTTTTTCGCCGAAATAAGAAGCAAGATGAAGCAACGCAAGCAGAACAGCAAGAGTCACAAGAGCTAAATGA
AGCGGTAACCAAAGCACCAACGCCTGCCCCGACTGAAACCGATACCGAAGCGCCAACACCTGCTCCGACTGAAACCGTTA
CCGAAGCCCCAACACCTGCGCCGACTGAAACCGTTACCGAAGCCCCAACACCTGCGCCGACTGAAATCGTTACCGAAGAA
GAACCAAAGAAAAAAGGCTTTTTCGCTCGTTTAAAAGAAGGCCTAAGTAAGACTCGTAAAACTTTTACCGACAGCCTTGC
AAACCTAGTGCTTGGTAAAAAAGAAATCGATGACGAGTTACTCGAAGATTTAGAAATGATTCTTTTAACTGCGGATGTGG
GGATTGATGCAACCGACCGCATTATTCAAAACCTGACCGATCAAGTTTCTCGCAAAGAATTAAGCGACCCTCAAGCGTTA
ATTGCCTCCCTTAAAGTACAATTAAATCAAATTCTGGAGCCAATCAATCGCCCATTGGAAATTGACGAATTCTTAAAAAC
GACTGGTGGCCCGTACGTGATTCTTATGGTTGGCATTAATGGCGTCGGAAAAACCACAACAATTGGTAAACTCGCCAAAA
AATTCCAGAATGAAGGAAAGTCAATCATGCTAGCCGCGGGTGATACTTTCCGTGCGGCAGCGGTCGAACAATTAGAAACT
TGGGGCGAACGTAACAATGTTCCAGTGATCGCTCAAAAAACCGGAGCGGATTCTGCTGCGGTAATCTTCGATGCAATGCA
ATCTGCCAAAGCAAAAAACATCGATGTTTTAATCGCTGACACAGCCGGCCGACTGCATACACAATCGAATTTAATGGAAG
AATTGAAAAAAGTGAAGCGCGTGATTGCAAAAGTGGATGACACAGCACCGCATGAAGTGATGCTGGTCATTGATGCAGGA
ACAGGGCAAAACGCATTGAACCAAACCAAGCAGTTCCATGAAGCCGTTGGCGTCTCAGGAATAACCCTAACCAAACTTGA
TGGTACCGCGAAAGGCGGCATTGTATATGCATTAGCGGAACAGACACAGGTTCCGATTCGTTACATTGGTATTGGTGAGC
AAATTGATGATTTGCGCCCATTCAACAGTGAGGACTTTACCAATGCCCTTTTCACTCAAAATGAGACGGCTTCCAAAACA
TAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (103-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.765	100	0.508