Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U8955_RS08325 Genome accession   NZ_OY769914
Coordinates   1640743..1641474 (-) Length   243 a.a.
NCBI ID   WP_038804523.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635743..1646474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS08295 (SDENT7746_08325) blpC 1636292..1636447 (+) 156 WP_038804516.1 quorum-sensing system pheromone BlpC -
  U8955_RS08300 (SDENT7746_08330) - 1636490..1637830 (-) 1341 WP_038804518.1 sensor histidine kinase -
  U8955_RS08305 (SDENT7746_08335) comE/blpR 1637844..1638581 (-) 738 WP_038804519.1 response regulator transcription factor Regulator
  U8955_RS08310 (SDENT7746_08340) - 1638586..1638924 (-) 339 WP_038804520.1 LytTR family DNA-binding domain-containing protein -
  U8955_RS08315 (SDENT7746_08345) - 1639203..1639532 (+) 330 WP_038804521.1 hypothetical protein -
  U8955_RS08320 (SDENT7746_08350) - 1639697..1640746 (-) 1050 WP_038804522.1 ABC transporter permease -
  U8955_RS08325 (SDENT7746_08355) pptA 1640743..1641474 (-) 732 WP_038804523.1 ABC transporter ATP-binding protein Regulator
  U8955_RS08330 (SDENT7746_08360) - 1641542..1641952 (+) 411 WP_038804524.1 HIT family protein -
  U8955_RS08335 (SDENT7746_08365) - 1641962..1642240 (+) 279 WP_000777742.1 hypothetical protein -
  U8955_RS08340 (SDENT7746_08370) - 1642304..1642963 (+) 660 WP_038804526.1 hypothetical protein -
  U8955_RS08345 (SDENT7746_08375) dnaJ 1643042..1644178 (-) 1137 WP_001066316.1 molecular chaperone DnaJ -
  U8955_RS08350 (SDENT7746_08380) dnaK 1644552..1646375 (-) 1824 WP_038804527.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27249.75 Da        Isoelectric Point: 4.9101

>NTDB_id=1161737 U8955_RS08325 WP_038804523.1 1640743..1641474(-) (pptA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGEIKINGLTLREDATNYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIDQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIHLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAQGNLQKLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1161737 U8955_RS08325 WP_038804523.1 1640743..1641474(-) (pptA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGTTAGAAATTAAAAACCTGACAGGAGGCTATGTTCACGTTCCTGTCTTGAAAGATGTGTCCTTTACAGTTGAAAGTGG
GCAGTTGGTTGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACTATCAATGAGATTATCGGTCTTTTGACGCCTT
ACAGTGGGGAAATCAAGATTAATGGCCTAACCCTGCGAGAAGATGCAACCAACTACCGCAAGCAGATTGGCTACATCCCA
GAAACGCCTAGCTTGTATGAAGAACTGACCCTCAGAGAGCATATCGAGACGGTTGCTATGGCTTATGGTATCGATCAGAA
AGTGGCTTTTGAGCGTGTAGAACCTTTGTTAAAGATGTTTCGTCTGGATCAAAAATTAGACTGGTTTCCTGTCCATTTCT
CAAAAGGAATGAAGCAGAAGGTTATGATTATCTGTGCTTTTGTCGTGGATCCGAGTCTTTTCATCGTAGATGAACCTTTC
CTTGGGCTCGATCCGCTGGCTATCTCTGACTTGATTCATCTTTTGGAAGTGGAAAAGCAAAAAGGCAAGTCCATTCTAAT
GAGTACCCACGTGCTGGACTCGGCGGAGAAGATGTGTGACGCCTTTGTTATTCTCCACAAGGGGGAGGTGAGGGCTCAGG
GGAACCTCCAGAAACTCCGTGAAGCCTTTGACATGCCTGAAGCTAGTTTGAATGACATTTACCTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.029

99.177

0.724
  pptA Streptococcus thermophilus LMD-9

72.199

99.177

0.716

Multiple sequence alignment