Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   U8955_RS06875 Genome accession   NZ_OY769914
Coordinates   1360139..1361371 (-) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355139..1366371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS06845 (SDENT7746_06870) - 1355329..1356297 (+) 969 WP_038805517.1 NAD(P)/FAD-dependent oxidoreductase -
  U8955_RS06850 (SDENT7746_06875) whiA 1356329..1357240 (-) 912 WP_038805519.1 DNA-binding protein WhiA -
  U8955_RS06855 (SDENT7746_06880) - 1357237..1358214 (-) 978 WP_038805521.1 YvcK family protein -
  U8955_RS06860 (SDENT7746_06885) rapZ 1358211..1359101 (-) 891 WP_038805522.1 RNase adapter RapZ -
  U8955_RS06865 (SDENT7746_06890) - 1359153..1359533 (-) 381 WP_038805523.1 RidA family protein -
  U8955_RS06870 (SDENT7746_06895) yihA 1359543..1360130 (-) 588 WP_038805524.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  U8955_RS06875 (SDENT7746_06900) clpX 1360139..1361371 (-) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  U8955_RS06880 (SDENT7746_06910) - 1361573..1362079 (-) 507 WP_038805526.1 dihydrofolate reductase -
  U8955_RS06885 (SDENT7746_06915) cmk 1362194..1362871 (-) 678 WP_038805527.1 (d)CMP kinase -
  U8955_RS06890 (SDENT7746_06920) - 1362881..1363375 (-) 495 WP_038805529.1 SAG1386/EF1546 family surface-associated protein -
  U8955_RS06895 - 1363421..1363624 (+) 204 WP_080641299.1 ferredoxin -
  U8955_RS06900 (SDENT7746_06925) - 1363700..1364665 (-) 966 WP_038805530.1 glycosyltransferase family 2 protein -
  U8955_RS06905 (SDENT7746_06930) galE 1364667..1365686 (-) 1020 WP_038805531.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=1161730 U8955_RS06875 WP_002874765.1 1360139..1361371(-) (clpX) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1161730 U8955_RS06875 WP_002874765.1 1360139..1361371(-) (clpX) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAATGCCTTTATCTGTAATGAATGTGTGGAATTGGCTCAGGAAATTATTCGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAGCTCCTCAATATCTTGAACCATTATGTGATCGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTAGCAGTTTACAACCACTACAAACGTATCAATTTCCATGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCTGGGAAAACTTTCTTGGCCCAGACTTTGGCTA
AGAGCTTGAACGTGCCTTTTGCTATTGCAGATGCGACAGCTCTGACTGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCAGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTTGATGAAATTGA
CAAAATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTTTCGGGCGAAGGGGTACAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTAGCCAGCGTACCGCCTCAAGGTGGACGCAAACATCCGCAACAAGAGATGATTCAGGTGGACACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGAGAAAAAGTCAT
CGGTTTTGGCCAAAATAACAAGGCGATTGACGAAAACAGCTCCTACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACAGTAGATGACTTGGTTCGC
ATCTTGAAAGAACCAAGAAATGCTTTGGTCAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAATTGGAATTTGA
CGATGAAGCCCTTCAAGAGATTGCCAATAAGGCTATAGAGCGTAAAACTGGTGCGCGTGGTCTTCGCTCCATCATTGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAAGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment