Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKPBX_RS07545 Genome accession   NZ_OY762653
Coordinates   1563216..1564598 (-) Length   460 a.a.
NCBI ID   WP_086628780.1    Uniprot ID   A0A5C5E6C0
Organism   MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1558216..1569598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPBX_RS07525 (SNQ41_RS07500) cysS 1558481..1559893 (-) 1413 WP_319995033.1 cysteine--tRNA ligase -
  ACKPBX_RS07530 (SNQ41_RS07505) epsC 1559981..1560499 (-) 519 WP_086628782.1 serine O-acetyltransferase EpsC -
  ACKPBX_RS07535 (SNQ41_RS07510) gltX 1560577..1562046 (-) 1470 WP_086628781.1 glutamate--tRNA ligase -
  ACKPBX_RS07540 (SNQ41_RS07515) - 1562095..1563189 (-) 1095 WP_086628844.1 PIN/TRAM domain-containing protein -
  ACKPBX_RS07545 (SNQ41_RS07520) radA 1563216..1564598 (-) 1383 WP_086628780.1 DNA repair protein RadA Machinery gene
  ACKPBX_RS07550 (SNQ41_RS07525) - 1564702..1565247 (-) 546 WP_319995034.1 dUTP diphosphatase -
  ACKPBX_RS07555 (SNQ41_RS07530) - 1565597..1566706 (+) 1110 WP_319995035.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  ACKPBX_RS07560 (SNQ41_RS07535) - 1567028..1568527 (-) 1500 WP_319995036.1 alpha-amylase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50675.08 Da        Isoelectric Point: 7.1211

>NTDB_id=1161642 ACKPBX_RS07545 WP_086628780.1 1563216..1564598(-) (radA) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
MAKKNAVKYVCQACGYESPKWLGRCPNCNTWNQMEEEREATKAVKQQQRSNFSGNVPEAIAIQDIKTENLPRVKTQMEEV
NHVLGGGIVPGSLILIGGDPGIGKSTLLLQVSAQINQGGHRVLYISGEESASQIKLRAERLGVKGTDFYIYPETDVDAIR
STIERIKPEFVIVDSIQTMIHPDITSTAGSVTQVRECTAEFMRIAKSNDIAIFIVGHVTKEGAIAGPRMLEHMVDTVLYF
EGDRHHAFRILRAVKNRFGSTDEIGVFEMIEGGLREVRNPSELFLEERLAGASGSAVVASLEGTRPILAEIQCLITPTVF
GNARRTASGLDYNRVSLIMAVLEKRAGLLLQNQDAYFKSTGGVKLDEPAIDLAVAVSIASSYWDTETSATECFIGEIGLT
GEIRRVSRIEQRVNEAEKLGFTKVYLPKNNMAGWKHPKGIQIIPVATLQETLRKVFPNKN

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1161642 ACKPBX_RS07545 WP_086628780.1 1563216..1564598(-) (radA) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
TTGGCAAAAAAAAATGCAGTGAAATACGTTTGTCAGGCTTGCGGGTACGAGTCGCCGAAATGGCTGGGACGTTGCCCGAA
CTGCAACACTTGGAACCAAATGGAGGAAGAGCGGGAAGCGACGAAAGCAGTGAAGCAACAGCAGCGTTCCAATTTCAGCG
GGAATGTACCTGAAGCAATCGCCATCCAGGACATCAAGACCGAAAATCTGCCGCGCGTCAAAACGCAGATGGAAGAAGTC
AACCATGTACTGGGCGGAGGCATCGTGCCCGGTTCGCTGATTTTGATCGGGGGCGACCCCGGCATCGGCAAGTCCACTTT
GCTGTTGCAGGTTTCGGCGCAGATCAACCAAGGCGGTCACCGCGTTCTTTACATCTCCGGAGAGGAAAGCGCGAGTCAGA
TCAAATTAAGGGCGGAGCGGCTAGGGGTCAAGGGTACCGACTTCTACATCTACCCGGAAACGGATGTCGACGCGATCCGC
AGCACAATCGAGCGGATCAAGCCGGAATTCGTCATCGTGGACTCGATCCAGACGATGATCCATCCGGACATCACGAGCAC
GGCCGGCAGCGTAACGCAAGTGCGTGAATGCACCGCCGAATTCATGCGGATTGCGAAGAGCAACGACATCGCGATATTCA
TCGTCGGACACGTGACGAAGGAAGGCGCCATCGCCGGACCGCGGATGCTGGAGCATATGGTGGATACGGTGCTGTATTTT
GAAGGCGATCGGCATCATGCTTTCCGGATCCTGCGCGCCGTCAAAAACCGTTTCGGATCGACCGATGAAATCGGTGTTTT
CGAAATGATCGAGGGCGGCTTGCGCGAGGTGCGGAATCCTTCCGAACTGTTCCTGGAAGAGCGGCTCGCCGGAGCATCCG
GATCGGCAGTCGTTGCCTCGCTTGAGGGCACGCGCCCGATTTTGGCCGAGATCCAATGTCTGATCACGCCGACTGTCTTC
GGGAATGCCCGCCGGACTGCGAGCGGCTTGGACTATAATCGGGTTTCCCTGATCATGGCCGTGCTGGAAAAACGGGCGGG
CTTGCTGCTTCAGAACCAGGATGCCTACTTCAAATCGACAGGCGGCGTGAAGCTGGATGAGCCGGCCATCGACTTGGCAG
TGGCGGTCAGCATCGCCTCAAGCTATTGGGACACCGAGACTTCCGCGACAGAGTGTTTTATCGGCGAAATCGGCCTGACC
GGAGAAATCCGCAGAGTCAGCCGGATCGAGCAACGCGTCAACGAAGCTGAAAAATTGGGCTTCACGAAGGTGTATCTGCC
GAAGAACAATATGGCTGGCTGGAAGCACCCGAAAGGGATCCAGATCATTCCTGTCGCAACGCTTCAAGAGACGCTGCGCA
AAGTATTTCCGAATAAAAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5E6C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.544

99.13

0.67
  radA Streptococcus pneumoniae D39

67.544

99.13

0.67
  radA Streptococcus pneumoniae R6

67.544

99.13

0.67
  radA Streptococcus pneumoniae TIGR4

67.544

99.13

0.67
  radA Streptococcus mitis NCTC 12261

67.544

99.13

0.67
  radA Streptococcus mitis SK321

67.325

99.13

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

99.13

0.643

Multiple sequence alignment