Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG38_RS10755 Genome accession   NZ_CP010145
Coordinates   2059004..2059741 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain D5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054004..2064741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG38_RS10740 (RG38_10100) clpC 2054458..2057031 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  RG38_RS10745 (RG38_10105) yfiH 2057161..2057892 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  RG38_RS10750 (RG38_10110) rluD 2057889..2058869 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG38_RS10755 (RG38_10115) comL 2059004..2059741 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG38_RS10765 (RG38_10125) raiA 2060012..2060353 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG38_RS27410 pheL 2060457..2060504 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RG38_RS10770 (RG38_10130) pheA 2060603..2061763 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG38_RS10775 (RG38_10135) tyrA 2061806..2062927 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG38_RS10780 (RG38_10140) aroF 2062938..2064008 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG38_RS10785 (RG38_10145) yfiL 2064218..2064583 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=116164 RG38_RS10755 WP_000197686.1 2059004..2059741(+) (comL) [Escherichia coli strain D5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=116164 RG38_RS10755 WP_000197686.1 2059004..2059741(+) (comL) [Escherichia coli strain D5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376