Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SLT86_RS02055 Genome accession   NZ_OY761810
Coordinates   423510..425282 (+) Length   590 a.a.
NCBI ID   WP_319490076.1    Uniprot ID   -
Organism   MAG: uncultured Caproiciproducens sp. isolate b00f100b-a584-4b5e-973e-d712fb7ff989     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 418510..430282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLT86_RS02035 - 418710..419687 (+) 978 WP_319488994.1 serine hydrolase -
  SLT86_RS02040 - 419800..420474 (+) 675 WP_319488995.1 response regulator transcription factor -
  SLT86_RS02045 - 420471..421514 (+) 1044 WP_319488996.1 HAMP domain-containing sensor histidine kinase -
  SLT86_RS02050 rcrP 421654..423411 (+) 1758 WP_319488997.1 ABC transporter ATP-binding protein Regulator
  SLT86_RS02055 rcrQ 423510..425282 (+) 1773 WP_319490076.1 ABC transporter ATP-binding protein Regulator
  SLT86_RS02060 - 425389..426981 (+) 1593 WP_319488998.1 efflux RND transporter periplasmic adaptor subunit -
  SLT86_RS02065 - 426978..427709 (+) 732 WP_319488999.1 ABC transporter ATP-binding protein -
  SLT86_RS02070 - 427696..428964 (+) 1269 WP_319489000.1 ABC transporter permease -
  SLT86_RS02075 - 429202..430086 (-) 885 WP_319489001.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64687.85 Da        Isoelectric Point: 6.6164

>NTDB_id=1161571 SLT86_RS02055 WP_319490076.1 423510..425282(+) (rcrQ) [MAG: uncultured Caproiciproducens sp. isolate b00f100b-a584-4b5e-973e-d712fb7ff989]
MGATGENAKDFKQTWKKLIDYCKPYLAVIITALLCSVVGTIFTLVGPNKLSEITDLITKGLKTGIDLNAVVKIGVTLVVL
YGIGALLSFAQGYIMATVTQKVTKNLRSDISRKINRLPLWYYNKTTHGDILSRVTNDVDTIGQTMNQSIGTLISAATLFL
GSLIMMLFTNVIMTIAAVVSTLIGFALMMIIMSKSQKYFTSQQRYLGAMNGHVDEIYSGHNVVKAYNGEKSSKKDFDDIN
EKLCDSAFKSQLLSGLMMPIMSFIGNFGYVAVCISGAILAINGTISFGVIVAFMLYIRLFTQPLSQLAQAATSLQSTAAA
SERVFGFLDEEEMADESHKTTHLSSAKGEVEFHNVSFGYEDSNETVIHNFSAKANPGQKIAIVGPTGAGKTTIVNLLMRF
HEIKAGEILIDGVPISELTRENVHDLFCMVLQDTWLFEGTIRENIVYCKEGVSDAEVVRVCKSVGIHHFIKTLPHGYDTI
LSNESSLSAGQKQQITIARAMIENSPMLILDEATSSVDTRTEVLIQRAMDKLMEGRTSFVIAHRLSTIKNADIILVMKDG
DIIESGNHQELLAKGGFYAELYNSQFEKAS

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=1161571 SLT86_RS02055 WP_319490076.1 423510..425282(+) (rcrQ) [MAG: uncultured Caproiciproducens sp. isolate b00f100b-a584-4b5e-973e-d712fb7ff989]
ATGGGAGCAACCGGAGAAAATGCGAAAGATTTTAAACAAACCTGGAAAAAGTTAATTGATTATTGCAAACCTTATCTGGC
AGTAATCATTACGGCGCTTCTCTGTTCTGTGGTAGGCACGATATTTACTCTTGTCGGCCCGAACAAGCTCAGCGAGATTA
CAGACCTGATTACCAAAGGGCTTAAAACAGGAATTGATTTAAACGCTGTCGTCAAAATTGGCGTCACGCTCGTAGTGCTC
TACGGAATTGGCGCGCTGCTCTCCTTTGCTCAAGGATATATCATGGCTACGGTAACGCAAAAGGTTACCAAAAATCTGCG
CTCGGATATATCTCGTAAAATCAACAGGCTGCCGCTTTGGTACTATAACAAAACAACACATGGAGATATATTGAGCCGTG
TGACCAACGATGTTGATACGATTGGACAAACCATGAACCAGAGCATCGGCACGCTCATATCCGCCGCGACCCTTTTTCTT
GGTTCACTCATTATGATGCTTTTCACTAATGTAATCATGACAATTGCAGCCGTTGTTTCCACCCTCATAGGCTTTGCGCT
GATGATGATAATCATGTCAAAATCGCAAAAATACTTTACGAGTCAGCAGCGTTATCTAGGAGCAATGAATGGTCATGTTG
ATGAGATTTATTCGGGGCATAACGTAGTGAAAGCATATAATGGCGAGAAATCATCAAAGAAAGACTTTGATGACATCAAT
GAAAAGCTCTGTGACAGCGCGTTCAAGTCTCAGCTTCTGTCCGGTTTGATGATGCCGATCATGTCGTTCATTGGAAATTT
TGGTTATGTCGCTGTTTGTATTTCAGGTGCAATTCTTGCTATCAACGGCACAATCAGTTTTGGAGTCATCGTTGCATTCA
TGCTCTATATTAGGCTGTTCACACAGCCTCTTTCGCAGCTTGCACAAGCCGCCACAAGTCTTCAATCCACAGCCGCTGCC
AGTGAACGTGTATTTGGATTTTTGGATGAAGAAGAAATGGCAGATGAGAGTCATAAAACAACGCATCTTTCTTCTGCAAA
GGGAGAGGTTGAATTCCACAATGTGAGTTTCGGGTATGAAGATTCCAATGAAACAGTGATTCATAATTTTTCAGCAAAGG
CGAATCCCGGCCAAAAAATCGCCATCGTCGGCCCAACAGGAGCGGGTAAGACTACAATTGTCAATCTGCTTATGCGCTTC
CATGAAATCAAAGCTGGTGAAATTCTGATTGATGGTGTGCCGATCAGTGAACTTACCCGTGAAAATGTTCATGATCTATT
CTGCATGGTTCTTCAAGATACATGGCTGTTTGAGGGTACAATCAGGGAAAATATTGTTTATTGTAAGGAAGGTGTAAGTG
ATGCCGAAGTGGTAAGGGTTTGCAAATCAGTAGGCATCCACCACTTCATAAAGACATTACCACACGGGTATGACACAATT
CTCAGCAATGAATCAAGTCTTTCCGCGGGTCAGAAGCAACAGATTACGATCGCACGCGCTATGATTGAAAATTCTCCGAT
GTTGATACTTGATGAGGCGACAAGCTCCGTTGATACCCGTACCGAGGTGCTGATACAGCGGGCTATGGATAAATTGATGG
AGGGCAGAACTTCCTTTGTTATCGCACACCGTCTTTCCACCATCAAAAATGCCGATATAATTTTGGTTATGAAGGATGGT
GATATTATTGAAAGTGGTAATCATCAGGAGCTGCTTGCGAAAGGAGGCTTCTACGCAGAACTGTACAACAGTCAGTTCGA
AAAGGCATCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-304)

ABC transporter (ABC_tran)

(368-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.282

98.475

0.554

Multiple sequence alignment