Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SLT86_RS02050 Genome accession   NZ_OY761810
Coordinates   421654..423411 (+) Length   585 a.a.
NCBI ID   WP_319488997.1    Uniprot ID   -
Organism   MAG: uncultured Caproiciproducens sp. isolate b00f100b-a584-4b5e-973e-d712fb7ff989     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 416654..428411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLT86_RS02030 - 417749..418309 (+) 561 WP_319488993.1 GrpB family protein -
  SLT86_RS02035 - 418710..419687 (+) 978 WP_319488994.1 serine hydrolase -
  SLT86_RS02040 - 419800..420474 (+) 675 WP_319488995.1 response regulator transcription factor -
  SLT86_RS02045 - 420471..421514 (+) 1044 WP_319488996.1 HAMP domain-containing sensor histidine kinase -
  SLT86_RS02050 rcrP 421654..423411 (+) 1758 WP_319488997.1 ABC transporter ATP-binding protein Regulator
  SLT86_RS02055 rcrQ 423510..425282 (+) 1773 WP_319490076.1 ABC transporter ATP-binding protein Regulator
  SLT86_RS02060 - 425389..426981 (+) 1593 WP_319488998.1 efflux RND transporter periplasmic adaptor subunit -
  SLT86_RS02065 - 426978..427709 (+) 732 WP_319488999.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64698.16 Da        Isoelectric Point: 6.7333

>NTDB_id=1161570 SLT86_RS02050 WP_319488997.1 421654..423411(+) (rcrP) [MAG: uncultured Caproiciproducens sp. isolate b00f100b-a584-4b5e-973e-d712fb7ff989]
MTKIFKYMKKKEWMLILCSLVFIMAQVYLDLKLPDYMAEITQLVQSGSNQMDKILAAGGWMILCALGSLVSSFIVAGFAA
RVASTFSKKLRELQFDNVEAFSMEEINGFSTASLITRSTNDVTQVQTLVAMGLQAIIKAPIMAVFAITKIANKSWQWTTT
TAVAVFVLIIIISVIIVFVIPRFKKIQGLTDNLNRVTRENLTGLSVVRAYNSEKYQENKFEIANNELTSNNLFANRVMAI
MQPGMTAIMSGLSLAIYWIGAYLINAAGITDKITLFSNMVVFSSYAMQVIMAFMMLSMIFIMLPRASVSAKRIVEVIETK
PTILDGTITEPTKGVEGEVEFRNVSFKYPDAAEYVLNDVSFTAHKGETVAFIGSTGSGKSTLINLVPRFYDATEGEVLID
GVNVREYTQKALHNKLGYVPQRAVMFSGTVASNVAYGDNGSNAYTEEDVKKAVEIAQSKDFVENMPEQYDGDISQGGTNV
SGGQKQRLSIARAVCRKPEIYIFDDSFSALDYKTDRMLRSVLKKETAATTSLIVAQRIGTIKDADKIIVLDEGSVVDMGT
HEELMKKCKIYQEIALSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1161570 SLT86_RS02050 WP_319488997.1 421654..423411(+) (rcrP) [MAG: uncultured Caproiciproducens sp. isolate b00f100b-a584-4b5e-973e-d712fb7ff989]
ATGACAAAAATATTCAAGTATATGAAAAAGAAAGAGTGGATGTTGATTCTGTGCAGTCTTGTGTTTATCATGGCACAGGT
TTATCTCGACTTAAAACTACCCGACTATATGGCTGAAATCACTCAGCTTGTTCAGAGTGGCAGTAATCAAATGGATAAGA
TTCTTGCCGCGGGCGGATGGATGATTCTGTGTGCGCTCGGGAGTCTTGTATCCTCTTTTATCGTTGCAGGTTTTGCAGCA
CGGGTTGCTTCAACTTTCTCAAAAAAATTGCGTGAATTGCAGTTCGATAATGTTGAAGCCTTTTCCATGGAGGAAATTAA
CGGATTTTCTACTGCAAGTCTAATTACTCGCTCCACCAACGATGTCACTCAGGTGCAGACGCTTGTTGCAATGGGCTTGC
AGGCAATTATTAAGGCACCGATCATGGCTGTATTTGCGATTACAAAGATTGCAAATAAAAGTTGGCAATGGACAACAACA
ACTGCCGTTGCAGTGTTTGTTCTTATTATAATCATCAGCGTCATTATCGTATTTGTAATTCCGAGGTTTAAGAAGATTCA
GGGGCTTACAGATAATCTCAACCGAGTAACAAGAGAAAACCTTACAGGGCTTAGTGTAGTTAGGGCATATAACTCCGAGA
AATATCAGGAAAACAAATTTGAGATTGCGAACAATGAGCTTACCAGCAATAATCTTTTTGCAAACCGTGTTATGGCAATT
ATGCAGCCGGGCATGACAGCAATTATGAGCGGGCTCAGTCTTGCGATTTATTGGATCGGTGCTTATCTCATTAACGCTGC
CGGAATTACCGACAAAATCACATTGTTTTCGAACATGGTTGTATTCTCTTCTTATGCAATGCAGGTAATCATGGCATTTA
TGATGCTTAGCATGATTTTCATCATGCTGCCTCGCGCCTCAGTATCTGCCAAGCGTATTGTTGAAGTAATTGAAACCAAG
CCTACGATACTTGATGGTACGATAACTGAACCAACCAAAGGCGTAGAAGGAGAAGTCGAATTCCGTAATGTCAGTTTTAA
ATATCCCGATGCGGCAGAATATGTGCTGAATGATGTAAGCTTCACAGCGCACAAGGGCGAAACGGTCGCGTTTATCGGTT
CAACGGGCAGCGGAAAGAGTACCCTGATTAATCTGGTACCCCGCTTCTATGATGCGACAGAGGGAGAAGTGCTCATAGAT
GGTGTGAACGTCCGTGAATACACACAAAAAGCACTTCATAACAAACTTGGCTATGTTCCCCAAAGAGCCGTGATGTTTTC
CGGTACGGTTGCGTCCAATGTCGCATACGGCGACAACGGCAGCAATGCTTACACGGAAGAAGATGTGAAGAAGGCGGTTG
AGATTGCGCAAAGTAAAGATTTCGTCGAAAACATGCCTGAGCAGTACGATGGAGATATTTCGCAGGGTGGAACGAATGTA
TCCGGCGGCCAGAAGCAGCGGCTATCCATCGCGCGTGCGGTTTGCAGAAAACCGGAAATATATATTTTTGATGACTCCTT
CTCTGCACTGGACTATAAAACGGATAGGATGTTACGTTCCGTACTGAAGAAGGAAACCGCTGCTACTACTTCTCTCATCG
TTGCACAGCGCATCGGTACAATTAAAGATGCAGATAAAATCATTGTGCTTGATGAAGGGAGCGTGGTCGACATGGGAACC
CATGAGGAATTAATGAAAAAATGCAAGATATATCAAGAAATCGCACTTTCACAGCTTTCAAAGGAGGAACTGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.517

100

0.535

Multiple sequence alignment