Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACLMBR_RS02975 Genome accession   NZ_OY761017
Coordinates   552349..554049 (+) Length   566 a.a.
NCBI ID   WP_319995786.1    Uniprot ID   -
Organism   MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 547349..559049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBR_RS02945 (U2929_RS02945) nusB 547542..547997 (+) 456 WP_107995143.1 transcription antitermination factor NusB -
  ACLMBR_RS02950 (U2929_RS02950) folD 548124..548963 (+) 840 WP_321380832.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ACLMBR_RS02955 (U2929_RS02955) xseA 548980..550314 (+) 1335 WP_321380835.1 exodeoxyribonuclease VII large subunit -
  ACLMBR_RS02960 (U2929_RS02960) - 550314..550559 (+) 246 WP_086627792.1 exodeoxyribonuclease VII small subunit -
  ACLMBR_RS02965 (U2929_RS02965) - 550565..551458 (+) 894 WP_200831796.1 polyprenyl synthetase family protein -
  ACLMBR_RS02970 (U2929_RS02970) - 551471..552313 (+) 843 WP_119093683.1 TlyA family RNA methyltransferase -
  ACLMBR_RS02975 (U2929_RS02975) recN 552349..554049 (+) 1701 WP_319995786.1 DNA repair protein RecN Machinery gene
  ACLMBR_RS02980 (U2929_RS02980) - 554093..554833 (+) 741 WP_086628183.1 glycerophosphodiester phosphodiesterase -
  ACLMBR_RS02985 (U2929_RS02985) miaA 554862..555776 (+) 915 WP_321381989.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ACLMBR_RS02990 (U2929_RS02990) hflX 555815..557074 (+) 1260 WP_086627796.1 GTPase HflX -
  ACLMBR_RS02995 (U2929_RS02995) - 557058..558314 (+) 1257 WP_086627797.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63279.24 Da        Isoelectric Point: 4.7480

>NTDB_id=1161528 ACLMBR_RS02975 WP_319995786.1 552349..554049(+) (recN) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
MLQELSIKNFAIIENLQVSFDEGMTVLTGETGAGKSIIIDAVGLLAGGRGSNDLIRYGENKTVIQGLFSIPENAKTVSVL
ESYGIEADGNQVLLQRELSRNGKNISRVNGTIVTVATLREVGETLIDIHGQNEHQELMDPQKHIDLLDQFAGNELREVKM
TYLNTYSKYVDTRKQLIQLKTDEKETVQRIDLLTFQIKEIEQAQLKDPEEDEKLEEERNLLVNYQKVMQALTSAYDSMQN
SEENGIDKIGLGMAALEKVQDINPVYQAIASSVSAAYYQLQECAGDILSEIEQLSYDEGRLNEIENRLELIRQLKRKYGN
TISEVLGHYEKISQELDLIENRESYLEKLNVDYNKAKEEILAIGKQLTAIRGKAAVVLEEQIQLQLKELYMEKVLFKTVF
HVQPGKLAITDNGLDHVEFYIATNVGEPLKALAKVASGGELSRMMLAMKAIFTKTQGITSIIFDEVDTGVSGRVAQAIAN
KIHLVASYSQVLCITHLPQVAAMADQHLYIEKEIIADRTKTHVKPLFGPERINEVARMLAGTDITELSLAHAKELLQLAD
TEKNKA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=1161528 ACLMBR_RS02975 WP_319995786.1 552349..554049(+) (recN) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
ATGTTACAAGAGTTGTCCATTAAAAATTTTGCAATAATTGAAAATCTTCAAGTGAGTTTCGACGAGGGTATGACTGTGCT
GACTGGGGAAACCGGAGCAGGGAAATCCATCATCATCGATGCCGTTGGTCTGTTGGCAGGCGGAAGAGGATCCAACGATT
TGATTCGATACGGCGAAAACAAGACGGTCATCCAAGGGCTTTTCAGTATTCCCGAAAACGCCAAGACAGTGTCCGTGTTG
GAATCGTATGGAATAGAAGCGGATGGGAACCAAGTTCTGCTGCAACGGGAACTTTCCCGGAACGGTAAGAACATTTCCCG
CGTCAACGGCACAATCGTAACGGTTGCGACTCTGCGCGAAGTCGGCGAAACGCTGATCGATATCCACGGGCAGAACGAGC
ATCAAGAATTGATGGATCCACAAAAACATATTGACCTGCTGGATCAGTTCGCCGGGAATGAACTGAGAGAAGTCAAAATG
ACATATCTCAATACTTATTCCAAATATGTGGATACACGTAAGCAATTGATCCAATTGAAGACAGACGAGAAAGAAACAGT
CCAAAGAATCGACTTGTTGACTTTCCAAATCAAGGAAATCGAGCAAGCGCAGTTGAAAGATCCTGAAGAGGATGAAAAAC
TGGAAGAAGAACGGAACCTGCTCGTCAATTATCAAAAAGTCATGCAAGCTTTAACGAGTGCGTACGATTCAATGCAGAAC
AGCGAAGAGAACGGCATCGACAAAATCGGTCTCGGCATGGCGGCGTTGGAAAAAGTGCAGGACATCAATCCGGTCTATCA
GGCAATCGCATCCTCGGTATCGGCAGCGTATTACCAACTGCAGGAATGCGCCGGGGACATCCTGTCAGAGATCGAGCAAT
TGTCCTACGATGAAGGGCGCTTGAACGAAATCGAGAACCGATTGGAATTGATCCGCCAGTTGAAGCGGAAATACGGAAAC
ACAATCAGTGAAGTGCTGGGGCATTACGAAAAGATATCCCAAGAGCTGGATCTGATCGAAAACCGGGAAAGCTACCTTGA
GAAACTCAATGTGGACTACAATAAAGCAAAAGAAGAGATTTTGGCTATCGGCAAACAACTGACAGCCATCCGCGGAAAAG
CCGCAGTCGTTCTGGAAGAACAGATCCAACTGCAGTTAAAGGAACTTTACATGGAAAAGGTCCTTTTCAAGACTGTTTTC
CATGTACAACCTGGGAAGCTTGCGATTACGGATAACGGGTTGGACCACGTGGAATTCTATATCGCTACGAACGTCGGCGA
ACCCCTGAAAGCATTGGCCAAGGTGGCCAGCGGCGGCGAACTCTCACGGATGATGTTGGCCATGAAGGCTATCTTTACCA
AAACGCAAGGCATCACCAGCATCATCTTTGATGAGGTTGATACAGGTGTTTCGGGCAGGGTAGCGCAAGCGATAGCCAAT
AAGATCCACTTGGTGGCCAGTTACTCGCAGGTGCTCTGCATCACGCATCTTCCGCAGGTGGCAGCGATGGCGGATCAGCA
TCTCTATATAGAAAAAGAGATCATCGCCGATCGGACAAAGACGCATGTCAAACCGCTGTTCGGGCCTGAACGCATCAACG
AAGTCGCACGCATGTTGGCGGGTACCGATATCACGGAGCTCTCATTGGCCCACGCAAAAGAATTGCTGCAGTTGGCCGAT
ACCGAAAAAAACAAAGCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.476

100

0.5

Multiple sequence alignment