Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AABI57_RS06145 Genome accession   NZ_OY754852
Coordinates   1170722..1171492 (-) Length   256 a.a.
NCBI ID   WP_002792199.1    Uniprot ID   A0A3K5JQQ7
Organism   Campylobacter coli isolate Reference     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1165722..1176492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABI57_RS06115 aspS 1165858..1167609 (+) 1752 WP_057030618.1 aspartate--tRNA ligase -
  AABI57_RS06120 - 1167606..1168181 (+) 576 WP_002776379.1 adenylate kinase -
  AABI57_RS06125 ppa 1168191..1168709 (+) 519 WP_060785215.1 inorganic diphosphatase -
  AABI57_RS06130 msrA 1168757..1169257 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AABI57_RS06135 - 1169480..1170355 (-) 876 WP_215474564.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AABI57_RS06140 ruvX 1170345..1170725 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  AABI57_RS06145 dprA 1170722..1171492 (-) 771 WP_002792199.1 DNA-processing protein DprA Machinery gene
  AABI57_RS06150 - 1171482..1172516 (-) 1035 WP_057032538.1 divergent polysaccharide deacetylase family protein -
  AABI57_RS06155 ilvC 1172520..1173542 (-) 1023 WP_057040519.1 ketol-acid reductoisomerase -
  AABI57_RS06160 - 1173665..1175599 (+) 1935 WP_215474565.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28775.19 Da        Isoelectric Point: 5.2497

>NTDB_id=1161337 AABI57_RS06145 WP_002792199.1 1170722..1171492(-) (dprA) [Campylobacter coli isolate Reference]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSAYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESHYKPKPYDFLLRNRLIIALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1161337 AABI57_RS06145 WP_002792199.1 1170722..1171492(-) (dprA) [Campylobacter coli isolate Reference]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCGCTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCCACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTATCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTGCCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGTGTGAGTGTGGATGAAGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAA
CTTGAAGGAAAAATTTCCATAGAGGGTCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JQQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

48.333

93.75

0.453

Multiple sequence alignment