Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | AABI57_RS03650 | Genome accession | NZ_OY754852 |
| Coordinates | 684150..685094 (-) | Length | 314 a.a. |
| NCBI ID | WP_215474557.1 | Uniprot ID | - |
| Organism | Campylobacter coli isolate Reference | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 674016..712281 | 684150..685094 | within | 0 |
Gene organization within MGE regions
Location: 674016..712281
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABI57_RS03600 | - | 674016..675572 (-) | 1557 | WP_215474558.1 | DNA polymerase III subunit gamma/tau | - |
| AABI57_RS03605 | rho | 675575..676873 (-) | 1299 | WP_002780613.1 | transcription termination factor Rho | - |
| AABI57_RS03610 | - | 676986..679349 (+) | 2364 | WP_004283865.1 | heavy metal translocating P-type ATPase | - |
| AABI57_RS03615 | - | 679342..679542 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| AABI57_RS03620 | - | 679572..679871 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| AABI57_RS03625 | - | 679948..680511 (+) | 564 | WP_002787747.1 | HAD family hydrolase | - |
| AABI57_RS03630 | rfaD | 680508..681461 (+) | 954 | WP_057030752.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| AABI57_RS03635 | rfaE1 | 681454..682839 (+) | 1386 | WP_057030751.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| AABI57_RS03640 | gmhA | 682836..683396 (+) | 561 | WP_038853888.1 | D-sedoheptulose 7-phosphate isomerase | - |
| AABI57_RS03645 | - | 683396..684157 (+) | 762 | WP_002777231.1 | glycosyltransferase family 25 protein | - |
| AABI57_RS03650 | waaF | 684150..685094 (-) | 945 | WP_215474557.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| AABI57_RS03655 | - | 685153..685974 (+) | 822 | WP_215474556.1 | glycosyltransferase family 2 protein | - |
| AABI57_RS03660 | - | 686457..686693 (-) | 237 | WP_072225130.1 | alpha-2,3-sialyltransferase | - |
| AABI57_RS03665 | - | 686916..687050 (-) | 135 | WP_002777225.1 | alpha-2,3-sialyltransferase | - |
| AABI57_RS03670 | - | 687142..687408 (+) | 267 | WP_215474555.1 | class I SAM-dependent methyltransferase | - |
| AABI57_RS03675 | - | 687552..687938 (+) | 387 | WP_171832379.1 | hypothetical protein | - |
| AABI57_RS03680 | - | 688019..688954 (+) | 936 | WP_002777223.1 | glycosyltransferase family 2 protein | - |
| AABI57_RS03685 | - | 688942..690153 (+) | 1212 | WP_002826798.1 | glycosyltransferase family 8 protein | - |
| AABI57_RS03690 | - | 690140..691195 (-) | 1056 | WP_002777221.1 | glycosyltransferase family 4 protein | - |
| AABI57_RS03695 | - | 691192..692739 (-) | 1548 | WP_002777220.1 | glycosyltransferase | - |
| AABI57_RS03700 | - | 692736..693623 (-) | 888 | WP_002780636.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| AABI57_RS03705 | waaC | 693616..694644 (-) | 1029 | WP_002787741.1 | lipopolysaccharide heptosyltransferase I | - |
| AABI57_RS03710 | - | 694709..695500 (+) | 792 | WP_031263840.1 | 3'-5' exonuclease | - |
| AABI57_RS03715 | galE | 695557..696543 (+) | 987 | WP_004283893.1 | UDP-glucose 4-epimerase GalE | - |
| AABI57_RS03720 | - | 696537..698237 (+) | 1701 | WP_002786296.1 | ATP-binding cassette domain-containing protein | - |
| AABI57_RS03725 | - | 698234..699310 (+) | 1077 | WP_002787737.1 | glycosyltransferase | - |
| AABI57_RS03730 | - | 699303..700232 (+) | 930 | WP_002777213.1 | glycosyltransferase family 2 protein | - |
| AABI57_RS03735 | - | 700220..701317 (+) | 1098 | WP_002777212.1 | glycosyltransferase | - |
| AABI57_RS03740 | - | 701321..703465 (+) | 2145 | WP_002780646.1 | STT3 domain-containing protein | - |
| AABI57_RS03745 | pglA | 703477..704607 (+) | 1131 | WP_002777209.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| AABI57_RS03750 | pglC | 704600..705202 (+) | 603 | WP_002822535.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| AABI57_RS03755 | pglD | 705189..705776 (+) | 588 | WP_002780649.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| AABI57_RS03760 | pglE | 705931..707091 (+) | 1161 | WP_002786286.1 | UDP-N-acetylbacillosamine transaminase | - |
| AABI57_RS03765 | pglF | 707094..708866 (+) | 1773 | WP_002777199.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| AABI57_RS03770 | - | 709081..709473 (+) | 393 | WP_002777196.1 | chemotaxis response regulator CheY | - |
| AABI57_RS03775 | - | 709487..710335 (+) | 849 | WP_002777195.1 | 50S ribosomal protein L11 methyltransferase | - |
| AABI57_RS03780 | ftsH | 710335..712281 (+) | 1947 | WP_002780655.1 | ATP-dependent zinc metalloprotease FtsH | - |
Sequence
Protein
Download Length: 314 a.a. Molecular weight: 36037.59 Da Isoelectric Point: 10.3006
>NTDB_id=1161332 AABI57_RS03650 WP_215474557.1 684150..685094(-) (waaF) [Campylobacter coli isolate Reference]
MKVFIHLPTWLGDAVMASPALYGAYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT
MKVFIHLPTWLGDAVMASPALYGAYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT
Nucleotide
Download Length: 945 bp
>NTDB_id=1161332 AABI57_RS03650 WP_215474557.1 684150..685094(-) (waaF) [Campylobacter coli isolate Reference]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGCTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCTAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGCTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCTAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
83.387 |
99.682 |
0.831 |