Detailed information NTG1161323

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: AABI57_RS02065
• Genome accession: NZ_OY754852
• Coordinates: 371215..372390 (+)
• Length: 391 a.a.
• NCBI ID: WP_002781160.1
• Uniprot ID: A0A0Q2ISE7
• Organism: Campylobacter coli isolate Reference
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 366215..377390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABI57_RS02040	ctsR	366793..367104 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
AABI57_RS02045	ctsD	367082..368500 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
AABI57_RS02050	ctsP	368493..369089 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
AABI57_RS02055	-	369086..369673 (+)	588	WP_002810825.1	CDC27 family protein	-
AABI57_RS02060	ctsE	369666..371228 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
AABI57_RS02065	ctsF	371215..372390 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
AABI57_RS02070	-	372387..373151 (-)	765	WP_002781157.1	TSUP family transporter	-
AABI57_RS02075	-	373154..373918 (-)	765	WP_002781156.1	TIGR02757 family protein	-
AABI57_RS02080	flgK	373935..375761 (-)	1827	WP_215474527.1	flagellar hook-associated protein FlgK	-
AABI57_RS02085	-	375771..376205 (-)	435	WP_002779263.1	flagellar protein FlgN	-
AABI57_RS02090	flgM	376247..376444 (-)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
AABI57_RS02095	-	376507..376848 (-)	342	WP_002779261.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45518.35 Da
• Isoelectric Point: 9.4461

>NTDB_id=1161323 AABI57_RS02065 WP_002781160.1 371215..372390(+) (ctsF) [Campylobacter coli isolate Reference]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=1161323 AABI57_RS02065 WP_002781160.1 371215..372390(+) (ctsF) [Campylobacter coli isolate Reference]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGACTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTCCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

3D structure

• AlphaFold DB: A0A0Q2ISE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611