Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AABI57_RS02040 Genome accession   NZ_OY754852
Coordinates   366793..367104 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli isolate Reference     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361793..372104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABI57_RS02030 - 363022..363105 (+) 84 Protein_394 HAD family hydrolase -
  AABI57_RS02035 nifJ 363209..366769 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AABI57_RS02040 ctsR 366793..367104 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  AABI57_RS02045 ctsD 367082..368500 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AABI57_RS02050 ctsP 368493..369089 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  AABI57_RS02055 - 369086..369673 (+) 588 WP_002810825.1 CDC27 family protein -
  AABI57_RS02060 ctsE 369666..371228 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=1161319 AABI57_RS02040 WP_002779316.1 366793..367104(+) (ctsR) [Campylobacter coli isolate Reference]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1161319 AABI57_RS02040 WP_002779316.1 366793..367104(+) (ctsR) [Campylobacter coli isolate Reference]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment