Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG37_RS16560 Genome accession   NZ_CP010143
Coordinates   3167063..3167800 (+) Length   245 a.a.
NCBI ID   WP_073503435.1    Uniprot ID   -
Organism   Escherichia coli strain D4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3162063..3172800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG37_RS16545 (RG37_15545) clpC 3162517..3165090 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  RG37_RS16550 (RG37_15550) yfiH 3165220..3165951 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  RG37_RS16555 (RG37_15555) rluD 3165948..3166928 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG37_RS16560 (RG37_15560) comL 3167063..3167800 (+) 738 WP_073503435.1 outer membrane protein assembly factor BamD Machinery gene
  RG37_RS16570 (RG37_15570) raiA 3168071..3168412 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG37_RS26895 pheL 3168516..3168563 (+) 48 WP_010723158.1 phe operon leader peptide -
  RG37_RS16575 (RG37_15575) pheA 3168662..3169822 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG37_RS16580 (RG37_15580) tyrA 3169865..3170986 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG37_RS16585 (RG37_15585) aroF 3170997..3172067 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG37_RS16590 (RG37_15590) yfiL 3172277..3172642 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27815.37 Da        Isoelectric Point: 6.4866

>NTDB_id=116097 RG37_RS16560 WP_073503435.1 3167063..3167800(+) (comL) [Escherichia coli strain D4]
MTRMKYLVAAATLSLFLAGCSGSKEDVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=116097 RG37_RS16560 WP_073503435.1 3167063..3167800(+) (comL) [Escherichia coli strain D4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGATGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376