Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACI6PE_RS04970 Genome accession   NZ_OY725319
Coordinates   1080906..1082711 (+) Length   601 a.a.
NCBI ID   WP_057730135.1    Uniprot ID   -
Organism   Levilactobacillus zymae strain LMG 22198     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075906..1087711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PE_RS04945 (LZ22198_MCBDPFMK_00992) - 1076131..1076865 (+) 735 WP_057730144.1 ABC transporter ATP-binding protein -
  ACI6PE_RS04950 (LZ22198_MCBDPFMK_00993) - 1076862..1078088 (+) 1227 WP_057730142.1 ABC transporter permease -
  ACI6PE_RS04955 (LZ22198_MCBDPFMK_00994) - 1078150..1078941 (+) 792 WP_057730140.1 phosphotransferase family protein -
  ACI6PE_RS04960 (LZ22198_MCBDPFMK_00995) trmB 1079005..1079652 (+) 648 WP_057730139.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACI6PE_RS04965 (LZ22198_MCBDPFMK_00996) - 1079755..1080825 (+) 1071 WP_057730137.1 competence protein CoiA -
  ACI6PE_RS04970 (LZ22198_MCBDPFMK_00997) pepF 1080906..1082711 (+) 1806 WP_057730135.1 oligoendopeptidase F Regulator
  ACI6PE_RS04975 (LZ22198_MCBDPFMK_00998) - 1082775..1083635 (-) 861 WP_057730133.1 DegV family protein -
  ACI6PE_RS04980 (LZ22198_MCBDPFMK_00999) - 1083764..1084408 (-) 645 WP_057730131.1 DsbA family protein -
  ACI6PE_RS04985 (LZ22198_MCBDPFMK_01000) - 1084733..1085386 (+) 654 WP_057730129.1 GTP pyrophosphokinase family protein -
  ACI6PE_RS04990 (LZ22198_MCBDPFMK_01001) - 1085389..1086192 (+) 804 WP_057730127.1 NAD kinase -
  ACI6PE_RS04995 (LZ22198_MCBDPFMK_01002) - 1086189..1087088 (+) 900 WP_057730125.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67473.55 Da        Isoelectric Point: 5.0779

>NTDB_id=1160606 ACI6PE_RS04970 WP_057730135.1 1080906..1082711(+) (pepF) [Levilactobacillus zymae strain LMG 22198]
MRQIPERSAVPEALTWDLTPIYADDTAFTQAIAKIKQQAQTVAQLKGHLATSGAELYRVTTAVFALNRQLERAYVYASLK
NDQDTGNAQYQDFADQTSALVATVATATAWFEPEVLALSADQLQALIAAEPKLAEFQHFFDVLGQQRAHTLSVPEERLLA
GASDIFEASEKTYGVLDNADLQFPVVQDEDGNDVKLSQGLYGVLLESTTPKVREQAFKALYSVYQQFRHTFASTLASEVK
THNFTAQVRHYGSAREAAMSANQIPAVVYETLVSTVNDHLDLLHQYVALRKDLLGLPELHMYDLYTPITGEPSLKYTYDQ
AKAEALKALAVLGPDYVANVQRMFDGRAIDVVENRGKRSGAYSGGMYDTKPYILLNWQDSLEGLFTLVHEMGHSIHSHYT
RHNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQAAAGKSLT
ADFMSDFYGKLNQRYYGDAVISDPQIADEWARIPHFYYDYYVYQYATGFAAATTLSQRILSGDPAKRDAYLGYLKAGSSS
LPLDVMRHAGVDMTQPDYLETAFQTFADRLKEFGDLARQLK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1160606 ACI6PE_RS04970 WP_057730135.1 1080906..1082711(+) (pepF) [Levilactobacillus zymae strain LMG 22198]
ATGCGACAAATTCCAGAACGCTCAGCGGTGCCCGAGGCCTTGACGTGGGACCTGACGCCCATCTATGCCGATGACACGGC
GTTTACTCAAGCCATTGCCAAGATCAAACAGCAGGCGCAAACGGTCGCCCAGTTGAAAGGGCATTTAGCGACCAGTGGGG
CCGAGTTATACCGGGTCACTACGGCCGTTTTTGCGCTGAACCGGCAACTCGAACGGGCCTACGTGTATGCGTCCCTCAAG
AATGATCAGGATACCGGGAATGCCCAGTATCAAGACTTTGCCGACCAAACCAGTGCCTTGGTGGCTACGGTGGCCACGGC
GACCGCGTGGTTTGAGCCCGAGGTCCTGGCCCTTTCCGCCGACCAACTGCAGGCGCTGATCGCGGCCGAACCGAAATTAG
CCGAATTCCAACACTTCTTTGACGTGTTGGGCCAACAGCGCGCCCACACCTTGTCGGTCCCCGAAGAACGGTTGTTGGCC
GGAGCCAGCGACATCTTCGAGGCGTCGGAGAAGACCTACGGCGTGCTCGACAACGCCGATCTGCAATTCCCCGTGGTGCA
AGATGAAGACGGCAACGACGTGAAGCTTTCGCAGGGCCTGTACGGCGTCTTACTAGAGTCGACGACGCCAAAAGTTCGTG
AGCAGGCGTTTAAGGCCCTCTACAGCGTTTATCAGCAATTCCGGCACACCTTTGCCTCCACGTTAGCTAGTGAGGTCAAA
ACGCATAATTTCACGGCTCAGGTGCGGCATTACGGGAGCGCCAGAGAAGCCGCGATGAGTGCCAACCAGATTCCGGCCGT
GGTCTATGAGACGCTGGTCAGTACCGTCAATGATCACTTGGACCTTCTACACCAATACGTGGCGTTGCGCAAGGACTTAT
TGGGACTGCCCGAGTTACACATGTACGATCTGTACACGCCGATCACCGGGGAGCCGAGTCTGAAGTACACTTACGACCAG
GCCAAGGCGGAGGCATTAAAGGCCCTGGCCGTATTGGGGCCCGATTACGTGGCTAACGTGCAACGGATGTTTGATGGCCG
CGCCATCGATGTGGTGGAAAACCGGGGCAAGCGTTCCGGGGCCTATTCCGGTGGGATGTACGATACTAAGCCGTACATTT
TATTGAACTGGCAAGATAGCCTGGAAGGGTTGTTCACGCTAGTCCACGAAATGGGGCACAGTATTCATAGCCACTACACG
CGGCACAATCAGCCCTATCAGTACGGGGACTACTCGATCTTCGTGGCCGAAATTGCGTCGACGACCAACGAAAATCTGTT
GACCGATTACCTGTTGAAGACCCAAACGGATCCCAAGGTTCGCGCCTACGTTCTGAACCATTACCTGGACGGGTTCAAGG
GGACGGTCTACCGGCAGACCCAATTTGCCGAATTTGAAGACTACATCCACCAACAAGCCGCGGCGGGAAAGTCGTTGACT
GCCGACTTCATGAGCGACTTTTACGGCAAGCTCAATCAGCGCTACTATGGCGACGCGGTGATCTCGGATCCCCAGATTGC
CGACGAATGGGCCCGGATTCCGCACTTCTATTACGACTATTACGTTTACCAGTACGCCACCGGCTTTGCGGCGGCCACCA
CGTTATCCCAACGGATCTTGAGTGGGGACCCGGCCAAGCGCGACGCCTACCTGGGTTACCTGAAGGCCGGCAGTTCGTCC
TTACCGTTGGACGTGATGCGGCACGCTGGTGTGGATATGACCCAACCAGATTACCTGGAAACGGCCTTTCAAACCTTTGC
CGACCGGTTAAAGGAATTCGGCGACTTAGCCCGGCAGCTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.927

98.669

0.502

Multiple sequence alignment