Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI6PE_RS00050 Genome accession   NZ_OY725319
Coordinates   11022..11609 (+) Length   195 a.a.
NCBI ID   WP_057732951.1    Uniprot ID   -
Organism   Levilactobacillus zymae strain LMG 22198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6022..16609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PE_RS00030 (LZ22198_MCBDPFMK_00006) gyrA 6988..9528 (+) 2541 WP_057732959.1 DNA gyrase subunit A -
  ACI6PE_RS00035 (LZ22198_MCBDPFMK_00007) - 9715..9903 (+) 189 WP_057732957.1 hypothetical protein -
  ACI6PE_RS00040 (LZ22198_MCBDPFMK_00008) - 9997..10482 (+) 486 WP_057732955.1 hypothetical protein -
  ACI6PE_RS00045 (LZ22198_MCBDPFMK_00009) rpsF 10685..10981 (+) 297 WP_057732953.1 30S ribosomal protein S6 -
  ACI6PE_RS00050 (LZ22198_MCBDPFMK_00010) ssb 11022..11609 (+) 588 WP_057732951.1 single-stranded DNA-binding protein Machinery gene
  ACI6PE_RS00055 (LZ22198_MCBDPFMK_00011) rpsR 11639..11875 (+) 237 WP_045807732.1 30S ribosomal protein S18 -
  ACI6PE_RS00060 (LZ22198_MCBDPFMK_00012) - 12314..13003 (+) 690 WP_057732949.1 YoaK family protein -
  ACI6PE_RS00065 (LZ22198_MCBDPFMK_00013) - 13068..14252 (-) 1185 WP_057732947.1 amidohydrolase family protein -
  ACI6PE_RS00070 (LZ22198_MCBDPFMK_00014) - 14348..15952 (-) 1605 WP_057732945.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21210.82 Da        Isoelectric Point: 5.1959

>NTDB_id=1160596 ACI6PE_RS00050 WP_057732951.1 11022..11609(+) (ssb) [Levilactobacillus zymae strain LMG 22198]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFAQYMHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSSNRNAAPQGGNNYGAPVNNAPQNNQTQNNNPFTSGANNGPQANNHSNPASSAP
AGNNQNTNGNNGSNANDPFANTGDSIDISDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1160596 ACI6PE_RS00050 WP_057732951.1 11022..11609(+) (ssb) [Levilactobacillus zymae strain LMG 22198]
ATGATCAACCGAGTAGTACTTACTGGCCGACTGACACGGGACGTTGACTTACGATACACCCAAGGCGGTGCTGCTGTTGC
CACTTTTACGTTGGCCGTTGATCGGCGGTTCACCAACCAGCAAGGTGAGCGGGAAGCTGATTTCGTTAGTTGTGTGATTT
GGCGCAAGTCCGCGGAGAATTTTGCCCAATACATGCATAAAGGGTCCTTGGTCGGCATCGAAGGCCGTATCCAAACCCGG
AACTACGAAAACCAGCAGGGCCAACGGGTCTACGTGACCGAAGTGGTCGTCGAAAACTTTTCCTTCTTGGAACCTCGTTC
GAGCAATCGTAACGCGGCGCCTCAAGGTGGGAACAATTACGGCGCTCCTGTGAATAACGCACCTCAGAATAATCAGACTC
AGAATAACAATCCGTTTACCAGCGGCGCCAACAATGGCCCGCAGGCGAACAACCACTCGAACCCCGCCTCAAGTGCGCCG
GCCGGGAACAACCAGAACACTAACGGCAACAATGGTAGCAATGCCAACGATCCGTTTGCGAATACTGGGGACTCGATTGA
TATTTCCGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.868

100

0.585
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.269

100

0.518

Multiple sequence alignment