Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI6O8_RS00040 Genome accession   NZ_OY724155
Coordinates   9249..9806 (+) Length   185 a.a.
NCBI ID   WP_025085411.1    Uniprot ID   A0A210PAQ6
Organism   Companilactobacillus paralimentarius strain IMDO 1MG105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 10363..53497 9249..9806 flank 557


Gene organization within MGE regions


Location: 9249..53497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O8_RS00040 (CP1MG105_PKNLIEHK_00008) ssb 9249..9806 (+) 558 WP_025085411.1 single-stranded DNA-binding protein Machinery gene
  ACI6O8_RS00045 (CP1MG105_PKNLIEHK_00009) rpsR 9827..10063 (+) 237 WP_025085410.1 30S ribosomal protein S18 -
  ACI6O8_RS00050 (CP1MG105_PKNLIEHK_00011) - 10390..10593 (+) 204 WP_025085409.1 helix-turn-helix transcriptional regulator -
  ACI6O8_RS00055 (CP1MG105_PKNLIEHK_00012) - 10580..10966 (+) 387 WP_056955784.1 DUF3278 domain-containing protein -
  ACI6O8_RS00060 (CP1MG105_PKNLIEHK_00013) - 11035..12069 (+) 1035 WP_059075255.1 IS30 family transposase -
  ACI6O8_RS00065 (CP1MG105_PKNLIEHK_00014) - 12390..12929 (+) 540 WP_025085626.1 DUF3278 domain-containing protein -
  ACI6O8_RS00070 (CP1MG105_PKNLIEHK_00015) - 12968..13504 (+) 537 WP_056955786.1 hypothetical protein -
  ACI6O8_RS00075 (CP1MG105_PKNLIEHK_00016) - 13637..15637 (+) 2001 WP_025085629.1 DHH family phosphoesterase -
  ACI6O8_RS00080 (CP1MG105_PKNLIEHK_00017) rplI 15649..16104 (+) 456 WP_025085630.1 50S ribosomal protein L9 -
  ACI6O8_RS00085 (CP1MG105_PKNLIEHK_00018) dnaB 16112..17488 (+) 1377 WP_025085631.1 replicative DNA helicase -
  ACI6O8_RS00090 (CP1MG105_PKNLIEHK_00019) - 17509..18795 (+) 1287 WP_056955787.1 adenylosuccinate synthase -
  ACI6O8_RS00095 (CP1MG105_PKNLIEHK_00020) - 18950..19798 (+) 849 WP_025085632.1 NAD(P)H-binding protein -
  ACI6O8_RS00100 (CP1MG105_PKNLIEHK_00021) - 19860..20306 (+) 447 WP_025085633.1 Rrf2 family transcriptional regulator -
  ACI6O8_RS00105 (CP1MG105_PKNLIEHK_00022) - 20455..21384 (-) 930 WP_025085634.1 hypothetical protein -
  ACI6O8_RS00110 (CP1MG105_PKNLIEHK_00023) - 21457..22752 (+) 1296 WP_025085635.1 hypothetical protein -
  ACI6O8_RS00115 (CP1MG105_PKNLIEHK_00024) - 22762..25431 (+) 2670 WP_025085636.1 transglycosylase domain-containing protein -
  ACI6O8_RS00120 (CP1MG105_PKNLIEHK_00025) - 25544..26983 (-) 1440 WP_025085637.1 amino acid permease -
  ACI6O8_RS00125 (CP1MG105_PKNLIEHK_00026) - 27251..28528 (+) 1278 WP_025085638.1 LCP family protein -
  ACI6O8_RS00130 (CP1MG105_PKNLIEHK_00027) - 28619..30163 (+) 1545 WP_025085639.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACI6O8_RS00150 (CP1MG105_PKNLIEHK_00031) - 35789..36823 (+) 1035 WP_059075255.1 IS30 family transposase -
  ACI6O8_RS00170 (CP1MG105_PKNLIEHK_00035) - 43107..44729 (+) 1623 WP_235700329.1 helix-turn-helix domain-containing protein -
  ACI6O8_RS00175 (CP1MG105_PKNLIEHK_00036) - 44979..46169 (+) 1191 WP_025086078.1 MFS transporter -
  ACI6O8_RS00180 (CP1MG105_PKNLIEHK_00037) - 46183..47079 (+) 897 WP_056955849.1 alpha/beta hydrolase -
  ACI6O8_RS00185 (CP1MG105_PKNLIEHK_00038) - 47089..47565 (+) 477 WP_025086080.1 hypothetical protein -
  ACI6O8_RS00190 (CP1MG105_PKNLIEHK_00039) - 47565..48407 (+) 843 WP_034544395.1 sulfite exporter TauE/SafE family protein -
  ACI6O8_RS00195 (CP1MG105_PKNLIEHK_00040) - 48407..48772 (+) 366 WP_025086082.1 DUF1634 domain-containing protein -
  ACI6O8_RS00200 (CP1MG105_PKNLIEHK_00041) - 48885..51077 (-) 2193 WP_056955848.1 lectin-like domain-containing protein -
  ACI6O8_RS00205 (CP1MG105_PKNLIEHK_00042) - 51302..52330 (+) 1029 WP_152319109.1 IS30 family transposase -
  ACI6O8_RS00210 (CP1MG105_PKNLIEHK_00044) - 52565..53497 (-) 933 WP_034544610.1 IS30 family transposase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20480.89 Da        Isoelectric Point: 4.7410

>NTDB_id=1160373 ACI6O8_RS00040 WP_025085411.1 9249..9806(+) (ssb) [Companilactobacillus paralimentarius strain IMDO 1MG105]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFANFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRSESEKRNSGNGSSSNANSNQAPSYNQPSQSNQSPYGNNNNQSNNNSNNNNQSNN
SNNNMSDPFADNSKPIDISDDDLPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1160373 ACI6O8_RS00040 WP_025085411.1 9249..9806(+) (ssb) [Companilactobacillus paralimentarius strain IMDO 1MG105]
ATGATTAATCGAGTAGTTCTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCCAATGGGGCAGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATTAATTGTGTTATTT
GGAGAAAAGCTGCCGAGAATTTTGCTAATTTTACTAACAAAGGTTCTCTTGTTGGAATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGTCAAAGAGTTTATGTAACAGAAGTTGTCGTTGATAATTTCTCATTACTTGAATCTCGTTC
AGAATCTGAAAAGAGAAACTCTGGCAATGGTTCTTCTAGCAACGCTAATTCAAATCAAGCACCTAGCTATAATCAACCAA
GTCAATCAAATCAGTCTCCATATGGAAACAATAATAACCAAAGTAACAACAATAGTAATAACAATAATCAATCTAACAAT
TCAAACAATAATATGAGCGATCCGTTTGCTGACAATAGTAAACCAATCGACATATCAGATGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210PAQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.211

100

0.659
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.614

100

0.578

Multiple sequence alignment