Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACI6PH_RS00040 | Genome accession | NZ_OY724134 |
| Coordinates | 9249..9806 (+) | Length | 185 a.a. |
| NCBI ID | WP_025085411.1 | Uniprot ID | A0A210PAQ6 |
| Organism | Companilactobacillus paralimentarius strain R19081 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4249..14806
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI6PH_RS00030 (CPR19081_DFPECDIO_00006) | gyrA | 6210..8714 (+) | 2505 | WP_309510599.1 | DNA gyrase subunit A | - |
| ACI6PH_RS00035 (CPR19081_DFPECDIO_00007) | rpsF | 8915..9211 (+) | 297 | WP_025085412.1 | 30S ribosomal protein S6 | - |
| ACI6PH_RS00040 (CPR19081_DFPECDIO_00008) | ssb | 9249..9806 (+) | 558 | WP_025085411.1 | single-stranded DNA-binding protein | Machinery gene |
| ACI6PH_RS00045 (CPR19081_DFPECDIO_00009) | rpsR | 9827..10063 (+) | 237 | WP_025085410.1 | 30S ribosomal protein S18 | - |
| ACI6PH_RS00050 (CPR19081_DFPECDIO_00011) | - | 10388..10591 (+) | 204 | WP_404327983.1 | helix-turn-helix transcriptional regulator | - |
| ACI6PH_RS00055 (CPR19081_DFPECDIO_00012) | - | 10578..11117 (+) | 540 | WP_025085626.1 | DUF3278 domain-containing protein | - |
| ACI6PH_RS00060 (CPR19081_DFPECDIO_00013) | - | 11156..11692 (+) | 537 | WP_309510597.1 | hypothetical protein | - |
| ACI6PH_RS00065 (CPR19081_DFPECDIO_00014) | - | 11825..13825 (+) | 2001 | WP_025085629.1 | DHH family phosphoesterase | - |
| ACI6PH_RS00070 (CPR19081_DFPECDIO_00015) | rplI | 13837..14292 (+) | 456 | WP_025085630.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 20480.89 Da Isoelectric Point: 4.7410
>NTDB_id=1160321 ACI6PH_RS00040 WP_025085411.1 9249..9806(+) (ssb) [Companilactobacillus paralimentarius strain R19081]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFANFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRSESEKRNSGNGSSSNANSNQAPSYNQPSQSNQSPYGNNNNQSNNNSNNNNQSNN
SNNNMSDPFADNSKPIDISDDDLPF
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFANFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRSESEKRNSGNGSSSNANSNQAPSYNQPSQSNQSPYGNNNNQSNNNSNNNNQSNN
SNNNMSDPFADNSKPIDISDDDLPF
Nucleotide
Download Length: 558 bp
>NTDB_id=1160321 ACI6PH_RS00040 WP_025085411.1 9249..9806(+) (ssb) [Companilactobacillus paralimentarius strain R19081]
ATGATTAATCGAGTAGTTCTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCCAATGGGGCAGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATTAATTGTGTTATTT
GGAGAAAAGCTGCCGAGAATTTTGCTAATTTTACTAACAAAGGTTCTCTTGTTGGAATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGTCAAAGAGTTTATGTAACAGAAGTTGTCGTTGATAATTTCTCATTACTTGAATCTCGTTC
AGAATCTGAAAAGAGAAACTCTGGCAATGGTTCTTCTAGCAACGCTAATTCAAATCAAGCACCTAGCTATAATCAACCAA
GTCAATCAAATCAGTCTCCATATGGAAACAATAATAACCAAAGTAACAACAATAGTAATAACAATAATCAATCTAACAAT
TCAAACAATAATATGAGCGATCCGTTTGCTGACAATAGTAAACCAATCGACATATCAGATGACGATTTACCATTTTAA
ATGATTAATCGAGTAGTTCTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCCAATGGGGCAGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATTAATTGTGTTATTT
GGAGAAAAGCTGCCGAGAATTTTGCTAATTTTACTAACAAAGGTTCTCTTGTTGGAATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGTCAAAGAGTTTATGTAACAGAAGTTGTCGTTGATAATTTCTCATTACTTGAATCTCGTTC
AGAATCTGAAAAGAGAAACTCTGGCAATGGTTCTTCTAGCAACGCTAATTCAAATCAAGCACCTAGCTATAATCAACCAA
GTCAATCAAATCAGTCTCCATATGGAAACAATAATAACCAAAGTAACAACAATAGTAATAACAATAATCAATCTAACAAT
TCAAACAATAATATGAGCGATCCGTTTGCTGACAATAGTAAACCAATCGACATATCAGATGACGATTTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
64.211 |
100 |
0.659 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.614 |
100 |
0.578 |