Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG36_RS17710 Genome accession   NZ_CP010140
Coordinates   3382649..3383386 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain D3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3377649..3388386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG36_RS17695 (RG36_16705) clpC 3378103..3380676 (-) 2574 WP_069354125.1 ATP-dependent chaperone ClpB Regulator
  RG36_RS17700 (RG36_16710) yfiH 3380806..3381537 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  RG36_RS17705 (RG36_16715) rluD 3381534..3382514 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG36_RS17710 (RG36_16720) comL 3382649..3383386 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG36_RS17720 (RG36_16730) raiA 3383657..3383998 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG36_RS28905 pheL 3384102..3384149 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  RG36_RS17725 (RG36_16735) pheA 3384248..3385408 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG36_RS17730 (RG36_16740) tyrA 3385451..3386572 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG36_RS17735 (RG36_16745) aroF 3386583..3387653 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG36_RS17740 (RG36_16750) yfiL 3387863..3388228 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=116018 RG36_RS17710 WP_000197686.1 3382649..3383386(+) (comL) [Escherichia coli strain D3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=116018 RG36_RS17710 WP_000197686.1 3382649..3383386(+) (comL) [Escherichia coli strain D3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment