Detailed information NTG1160168

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QPK16_RS08845
• Genome accession: NZ_OX638610
• Coordinates: 1915940..1916812 (-)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 3541 isolate 3541
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1910940..1921812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPK16_RS08800 (JCHGIK_10145)	-	1911801..1911971 (-)	171	WP_003094672.1	DUF3094 family protein	-
QPK16_RS08805 (JCHGIK_10150)	-	1911997..1912446 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
QPK16_RS08810 (JCHGIK_10155)	-	1912443..1913072 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QPK16_RS08815 (JCHGIK_10160)	-	1913205..1913630 (+)	426	WP_009875877.1	GNAT family N-acetyltransferase	-
QPK16_RS08820 (JCHGIK_10165)	-	1913627..1914097 (+)	471	WP_003094664.1	hypothetical protein	-
QPK16_RS08825 (JCHGIK_10170)	-	1914094..1914783 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
QPK16_RS08830 (JCHGIK_10175)	-	1914889..1915098 (+)	210	WP_003094660.1	hypothetical protein	-
QPK16_RS08835 (JCHGIK_10180)	yacG	1915135..1915335 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
QPK16_RS08840 (JCHGIK_10185)	coaE	1915332..1915943 (-)	612	WP_033982615.1	dephospho-CoA kinase	-
QPK16_RS08845 (JCHGIK_10190)	pilD	1915940..1916812 (-)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QPK16_RS08850 (JCHGIK_10195)	pilC	1916813..1918030 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
QPK16_RS08855 (JCHGIK_10200)	pilB	1918034..1919734 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QPK16_RS08860 (JCHGIK_10205)	-	1919965..1920429 (+)	465	WP_023129290.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=1160168 QPK16_RS08845 WP_023084740.1 1915940..1916812(-) (pilD) [Pseudomonas aeruginosa strain 3541 isolate 3541]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1160168 QPK16_RS08845 WP_023084740.1 1915940..1916812(-) (pilD) [Pseudomonas aeruginosa strain 3541 isolate 3541]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472