Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QOS64_RS19275 Genome accession   NZ_OX460973
Coordinates   3843297..3843416 (+) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838297..3848416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS64_RS19255 - 3838648..3839159 (+) 512 Protein_3739 bacteriocin biosynthesis protein AlbG -
  QOS64_RS19260 - 3839166..3840542 (-) 1377 WP_168984762.1 YncE family protein -
  QOS64_RS19265 - 3840582..3841937 (-) 1356 WP_168984761.1 YncE family protein -
  QOS64_RS19270 rapF 3842168..3843313 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  QOS64_RS19275 phrF 3843297..3843416 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QOS64_RS19280 - 3843614..3843817 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  QOS64_RS19285 - 3843831..3844034 (+) 204 WP_007407641.1 hypothetical protein -
  QOS64_RS19290 - 3844069..3844254 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  QOS64_RS19295 - 3844440..3844721 (+) 282 WP_007407643.1 hypothetical protein -
  QOS64_RS19300 - 3844765..3845277 (+) 513 WP_023357177.1 stage II sporulation protein M -
  QOS64_RS19305 - 3845868..3846086 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  QOS64_RS19310 speB 3846254..3847126 (-) 873 WP_168984760.1 agmatinase -
  QOS64_RS19315 speE 3847185..3848015 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=1159482 QOS64_RS19275 WP_007407639.1 3843297..3843416(+) (phrF) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1159482 QOS64_RS19275 WP_007407639.1 3843297..3843416(+) (phrF) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment