Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QOS64_RS01845 Genome accession   NZ_OX460973
Coordinates   349882..350319 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 344882..355319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS64_RS01820 - 345901..347037 (+) 1137 WP_076425805.1 zinc-dependent alcohol dehydrogenase -
  QOS64_RS01825 - 347052..347486 (+) 435 WP_007409358.1 RDD family protein -
  QOS64_RS01830 - 347559..347882 (+) 324 WP_168985161.1 YckD family protein -
  QOS64_RS01835 - 347986..349422 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  QOS64_RS01840 nin/comJ 349463..349861 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  QOS64_RS01845 nucA/comI 349882..350319 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QOS64_RS01850 hxlB 350678..351235 (-) 558 WP_076425808.1 6-phospho-3-hexuloisomerase -
  QOS64_RS01855 hxlA 351232..351867 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  QOS64_RS01860 - 352099..352461 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1159417 QOS64_RS01845 WP_003156588.1 349882..350319(-) (nucA/comI) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1159417 QOS64_RS01845 WP_003156588.1 349882..350319(-) (nucA/comI) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment