Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   QOR55_RS02150 Genome accession   NZ_OX460911
Coordinates   374160..375194 (+) Length   344 a.a.
NCBI ID   WP_017647021.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-322     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 369160..380194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR55_RS02110 tsaE 369235..369678 (+) 444 WP_032459127.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QOR55_RS02115 - 369671..370192 (+) 522 WP_017647017.1 GNAT family N-acetyltransferase -
  QOR55_RS02120 - 370201..371508 (+) 1308 WP_000708160.1 LCP family protein -
  QOR55_RS02125 - 371572..371868 (-) 297 WP_017647018.1 hypothetical protein -
  QOR55_RS02130 - 371865..372284 (-) 420 WP_017647019.1 HIT family protein -
  QOR55_RS02135 - 372620..373123 (+) 504 WP_017647020.1 hypothetical protein -
  QOR55_RS02140 - 373175..373361 (-) 187 Protein_346 hypothetical protein -
  QOR55_RS02145 pptA 373433..374158 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  QOR55_RS02150 pptB 374160..375194 (+) 1035 WP_017647021.1 ABC transporter permease Regulator
  QOR55_RS02155 - 375252..376052 (+) 801 WP_000155919.1 phosphotransferase family protein -
  QOR55_RS02160 trmB 376042..376677 (+) 636 WP_283572977.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QOR55_RS02170 rimP 377168..377644 (+) 477 WP_047210184.1 ribosome maturation factor RimP -
  QOR55_RS02175 nusA 377680..378831 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  QOR55_RS02180 - 378853..379149 (+) 297 WP_001140526.1 YlxR family protein -
  QOR55_RS02185 - 379142..379444 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40232.62 Da        Isoelectric Point: 10.4988

>NTDB_id=1158816 QOR55_RS02150 WP_017647021.1 374160..375194(+) (pptB) [Streptococcus agalactiae isolate MRI Z2-322]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1158816 QOR55_RS02150 WP_017647021.1 374160..375194(+) (pptB) [Streptococcus agalactiae isolate MRI Z2-322]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGGATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTCTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485

  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483


Multiple sequence alignment