Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   QOR56_RS01065 Genome accession   NZ_OX460906
Coordinates   172447..173493 (+) Length   348 a.a.
NCBI ID   WP_283572031.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 167447..178493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS01050 - 168705..170360 (+) 1656 WP_115343100.1 peptide ABC transporter substrate-binding protein -
  QOR56_RS01055 - 170479..171393 (+) 915 WP_000598965.1 ABC transporter permease -
  QOR56_RS01060 - 171403..172434 (+) 1032 WP_283572030.1 ABC transporter permease -
  QOR56_RS01065 oppD 172447..173493 (+) 1047 WP_283572031.1 ABC transporter ATP-binding protein Regulator
  QOR56_RS01070 amiF 173493..174425 (+) 933 WP_000138506.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38716.17 Da        Isoelectric Point: 4.7608

>NTDB_id=1158716 QOR56_RS01065 WP_283572031.1 172447..173493(+) (oppD) [Streptococcus agalactiae isolate MRI Z2-265]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEDWSKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1158716 QOR56_RS01065 WP_283572031.1 172447..173493(+) (oppD) [Streptococcus agalactiae isolate MRI Z2-265]
ATGGAAAAAGAAACTATTTTAAGCGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
CGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTCCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGATTGGAGTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATCCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTGTTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCAGGAACACCACCAGATTTGTTGAATCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.251

99.713

0.79
  amiE Streptococcus salivarius strain HSISS4

55.457

97.414

0.54
  amiE Streptococcus thermophilus LMG 18311

54.867

97.414

0.534
  amiE Streptococcus thermophilus LMD-9

54.867

97.414

0.534

Multiple sequence alignment