Detailed information NTG1158452

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMX71_RS12020
• Genome accession: NZ_OX458332
• Coordinates: 2532943..2533812 (+)
• Length: 289 a.a.
• NCBI ID: WP_017366379.1
• Uniprot ID: A0AA35UWC6
• Organism: Methylococcus capsulatus isolate Mc(Nor)
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2527943..2538812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMX71_RS12010 (MCNOR_2510)	pilB	2529984..2531699 (+)	1716	WP_010961339.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QMX71_RS12015 (MCNOR_2511)	pilC	2531704..2532918 (+)	1215	WP_010961338.1	type II secretion system F family protein	Machinery gene
QMX71_RS12020 (MCNOR_2512)	pilD	2532943..2533812 (+)	870	WP_017366379.1	A24 family peptidase	Machinery gene
QMX71_RS12025 (MCNOR_2513)	coaE	2533820..2534416 (+)	597	WP_017366378.1	dephospho-CoA kinase	-
QMX71_RS12030 (MCNOR_2514)	zapD	2534572..2535285 (+)	714	WP_017366377.1	cell division protein ZapD	-
QMX71_RS12035 (MCNOR_2515)	yacG	2535299..2535514 (+)	216	WP_017366376.1	DNA gyrase inhibitor YacG	-
QMX71_RS12040 (MCNOR_2516)	cysG	2535527..2536951 (-)	1425	WP_017366375.1	siroheme synthase CysG	-
QMX71_RS12045 (MCNOR_2517)	-	2537000..2537230 (+)	231	WP_010961331.1	sulfurtransferase TusA family protein	-
QMX71_RS12050 (MCNOR_2518)	-	2537239..2537901 (-)	663	WP_017366374.1	HAD family hydrolase	-
QMX71_RS12055 (MCNOR_2519)	-	2538089..2538664 (+)	576	WP_010961329.1	RNA pyrophosphohydrolase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31169.81 Da
• Isoelectric Point: 6.9138

>NTDB_id=1158452 QMX71_RS12020 WP_017366379.1 2532943..2533812(+) (pilD) [Methylococcus capsulatus isolate Mc(Nor)]
MMLLPTGPAGVALCGSFGLIIGSFLNVVIHRLPLMMEQAWRRECGELLEPGTGRPVGEAEYNLWRPGSQCPHCQAPVRFW
QNVPVFSYLWLRGRCAACGTAISWRYPLVETLTGVLFAMVAWHFGASWQALAACALTAGLIALAFIDLDHLVLPDDITLP
LLWLGLLLNAQGLFCSLETALYGAVGGYLLLWTVHRGFLLLTGREGMGFGDFKLLAMLGAWMGWPMLPVIILFSSISGAV
IGSVALAVGGKGRDTPIPFGPFLAAGGWIALLWGNALNDAYWRWAAPGG

Nucleotide

• Length: 870 bp

>NTDB_id=1158452 QMX71_RS12020 WP_017366379.1 2532943..2533812(+) (pilD) [Methylococcus capsulatus isolate Mc(Nor)]
ATGATGTTGTTGCCGACCGGGCCGGCGGGGGTTGCCCTCTGCGGATCGTTCGGACTGATCATCGGGAGTTTTCTCAACGT
GGTCATCCACCGCCTGCCGCTCATGATGGAGCAGGCCTGGCGCAGGGAGTGCGGGGAGTTGCTCGAGCCCGGCACCGGAC
GGCCGGTGGGGGAAGCCGAATACAACCTGTGGAGACCCGGATCGCAGTGTCCGCACTGCCAGGCGCCGGTCCGGTTCTGG
CAGAATGTCCCCGTGTTCAGCTATCTTTGGCTGCGTGGCCGTTGTGCCGCTTGCGGCACGGCGATTTCCTGGCGTTATCC
TTTGGTCGAAACGCTCACGGGGGTGCTGTTCGCAATGGTGGCTTGGCATTTCGGCGCGTCCTGGCAGGCGCTGGCGGCGT
GCGCCCTAACGGCTGGCCTGATCGCCCTGGCTTTCATCGACCTGGATCACTTGGTACTGCCGGACGACATCACGCTTCCC
CTGTTGTGGCTGGGGCTGCTGCTGAATGCCCAAGGCCTCTTCTGCAGTCTGGAGACGGCGCTGTACGGTGCCGTTGGAGG
CTATCTCCTGCTATGGACGGTGCATCGCGGCTTTCTGCTCCTGACCGGCCGGGAGGGCATGGGGTTCGGCGACTTCAAGC
TACTCGCCATGCTCGGTGCCTGGATGGGGTGGCCGATGCTGCCGGTCATCATCCTGTTCTCATCCATCTCGGGTGCGGTG
ATCGGTTCGGTTGCGCTGGCAGTCGGCGGCAAGGGGAGGGACACGCCGATTCCCTTCGGGCCGTTTCTGGCGGCGGGTGG
CTGGATCGCCCTGCTGTGGGGAAATGCGCTCAACGACGCCTATTGGCGCTGGGCCGCTCCTGGAGGCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	49.643	96.886	0.481
pilD	Vibrio cholerae strain A1552	50.735	94.118	0.478
pilD	Vibrio campbellii strain DS40M4	47.985	94.464	0.453
pilD	Acinetobacter baumannii D1279779	49.057	91.696	0.45
pilD	Acinetobacter nosocomialis M2	48.302	91.696	0.443