Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P4E82_RS05750 Genome accession   NZ_OX442413
Coordinates   1142361..1143131 (-) Length   256 a.a.
NCBI ID   WP_002781662.1    Uniprot ID   A0A3Z9V747
Organism   Campylobacter coli isolate pure strain     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1137361..1148131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4E82_RS05720 aspS 1137497..1139248 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  P4E82_RS05725 - 1139245..1139820 (+) 576 WP_002781658.1 adenylate kinase -
  P4E82_RS05730 ppa 1139830..1140348 (+) 519 WP_002776378.1 inorganic diphosphatase -
  P4E82_RS05735 msrA 1140396..1140896 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  P4E82_RS05740 - 1141119..1141973 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  P4E82_RS05745 ruvX 1141984..1142364 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  P4E82_RS05750 dprA 1142361..1143131 (-) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  P4E82_RS05755 - 1143121..1144173 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  P4E82_RS05760 ilvC 1144176..1145198 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  P4E82_RS05765 - 1145321..1147255 (+) 1935 WP_002816777.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=1158374 P4E82_RS05750 WP_002781662.1 1142361..1143131(-) (dprA) [Campylobacter coli isolate pure strain]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1158374 P4E82_RS05750 WP_002781662.1 1142361..1143131(-) (dprA) [Campylobacter coli isolate pure strain]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9V747

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment