Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QOR53_RS04685 Genome accession   NZ_OX437061
Coordinates   884094..884753 (-) Length   219 a.a.
NCBI ID   WP_052845160.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 879094..889753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR53_RS04645 - 879433..880287 (-) 855 WP_052775417.1 lambda-exonuclease family protein -
  QOR53_RS04650 - 880289..880516 (-) 228 WP_002873578.1 helix-turn-helix domain-containing protein -
  QOR53_RS04655 - 880507..880764 (-) 258 WP_032595717.1 hypothetical protein -
  QOR53_RS04660 - 880755..881024 (-) 270 WP_002875049.1 hypothetical protein -
  QOR53_RS04665 - 881585..881857 (-) 273 WP_052775416.1 hypothetical protein -
  QOR53_RS04670 - 881999..882256 (+) 258 WP_048818571.1 hypothetical protein -
  QOR53_RS04675 - 882329..882784 (-) 456 WP_052775415.1 hypothetical protein -
  QOR53_RS04680 - 882771..883994 (-) 1224 WP_052775414.1 AAA family ATPase -
  QOR53_RS04685 CJE0566 884094..884753 (-) 660 WP_052845160.1 DNA/RNA non-specific endonuclease Regulator
  QOR53_RS04690 - 884773..885546 (-) 774 WP_052775413.1 hypothetical protein -
  QOR53_RS04695 - 885543..886274 (-) 732 WP_052775412.1 S24 family peptidase -
  QOR53_RS04700 - 886415..886630 (+) 216 WP_002865054.1 hypothetical protein -
  QOR53_RS04705 - 886782..887147 (-) 366 WP_002874369.1 hypothetical protein -
  QOR53_RS04710 - 887190..888191 (+) 1002 WP_052775411.1 hypothetical protein -
  QOR53_RS04715 - 888202..888852 (+) 651 WP_002871222.1 hypothetical protein -
  QOR53_RS04720 - 888870..889250 (+) 381 WP_002896784.1 hypothetical protein -
  QOR53_RS04725 - 889250..889636 (+) 387 WP_002795630.1 terminase small subunit -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25755.46 Da        Isoelectric Point: 10.0268

>NTDB_id=1158265 QOR53_RS04685 WP_052845160.1 884094..884753(-) (CJE0566) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MKKLILLPLLSTLAFADYTQYKPSEEFAKYFTKQSCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGKQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGYTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGDNFKECYQVPNHEVEDESIRKYKVNCGKIHI

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1158265 QOR53_RS04685 WP_052845160.1 884094..884753(-) (CJE0566) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
GTGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCTTTTGCTGACTATACGCAATATAAACCAAGCGAAGAGTT
TGCTAAGTATTTTACTAAGCAAAGTTGTTCGCAAGTTTTAGATAAATTCTATTATCTAAATTGCTATGATTATAATCTAA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCAAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGTACACTCT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAAGTTTAGAAGTTTTA
AATTTGGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGATAATTTTAAAGAATGTTACCAAGTGCCAAATCATGAAGTAGAAGATGAGAGTATAAGAAAATATAAGGTTAATT
GTGGTAAAATTCATATTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

95.392

99.087

0.945
  CJE1441 Campylobacter jejuni RM1221

92.056

97.717

0.9

Multiple sequence alignment