Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QOR50_RS02910 Genome accession   NZ_OX437059
Coordinates   550672..551322 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 545672..556322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR50_RS02875 - 546050..547054 (+) 1005 WP_002852264.1 membrane protein -
  QOR50_RS02880 tlyA 547051..547812 (+) 762 WP_002890333.1 TlyA family RNA methyltransferase -
  QOR50_RS02885 ribF 547778..548632 (+) 855 WP_002852206.1 bifunctional riboflavin kinase/FAD synthetase -
  QOR50_RS02890 cmoA 548619..549329 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  QOR50_RS02895 - 549319..549540 (-) 222 WP_002859102.1 EexN family lipoprotein -
  QOR50_RS02900 - 549537..549971 (-) 435 WP_002890334.1 EexN family lipoprotein -
  QOR50_RS02905 - 550029..550661 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  QOR50_RS02910 CJE0566 550672..551322 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  QOR50_RS02915 nth 551319..551945 (-) 627 WP_002852225.1 endonuclease III -
  QOR50_RS02920 peb4 552026..552847 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  QOR50_RS02925 fbaA 552847..553911 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  QOR50_RS02930 - 554006..555448 (+) 1443 WP_052787821.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=1158207 QOR50_RS02910 WP_002852117.1 550672..551322(-) (CJE0566) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1158207 QOR50_RS02910 WP_002852117.1 550672..551322(-) (CJE0566) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment