Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP56_RS17580 Genome accession   NZ_OX419652
Coordinates   3256059..3256703 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251059..3261703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS17545 (NRS6131_17400) mrpB 3252251..3252682 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KJP56_RS17550 (NRS6131_17405) mrpC 3252682..3253023 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP56_RS17555 (NRS6131_17410) mrpD 3253016..3254497 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  KJP56_RS17560 (NRS6131_17415) mrpE 3254503..3254979 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KJP56_RS17565 (NRS6131_17420) mrpF 3254979..3255263 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP56_RS17570 (NRS6131_17425) mnhG 3255247..3255621 (+) 375 WP_161986412.1 monovalent cation/H(+) antiporter subunit G -
  KJP56_RS17575 (NRS6131_17430) yuxO 3255660..3256040 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  KJP56_RS17580 (NRS6131_17435) comA 3256059..3256703 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP56_RS17585 (NRS6131_17440) comP 3256784..3259081 (-) 2298 WP_213419241.1 histidine kinase Regulator
  KJP56_RS17590 (NRS6131_17445) comX 3259089..3259250 (-) 162 WP_003241045.1 competence pheromone ComX -
  KJP56_RS17595 (NRS6131_17450) - 3259265..3260125 (-) 861 WP_046160795.1 polyprenyl synthetase family protein -
  KJP56_RS17600 (NRS6131_17455) degQ 3260310..3260450 (-) 141 WP_213419240.1 degradation enzyme regulation protein DegQ Regulator
  KJP56_RS17605 - 3260672..3260797 (+) 126 WP_154796978.1 hypothetical protein -
  KJP56_RS17610 (NRS6131_17460) - 3260912..3261280 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1158091 KJP56_RS17580 WP_003220716.1 3256059..3256703(-) (comA) [Bacillus subtilis isolate NRS6131]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1158091 KJP56_RS17580 WP_003220716.1 3256059..3256703(-) (comA) [Bacillus subtilis isolate NRS6131]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment