Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KJP56_RS13740 Genome accession   NZ_OX419652
Coordinates   2560959..2561390 (-) Length   143 a.a.
NCBI ID   WP_101502452.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2555959..2566390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS13690 (NRS6131_13640) sinI 2556152..2556325 (+) 174 WP_014477323.1 anti-repressor SinI family protein Regulator
  KJP56_RS13695 (NRS6131_13645) sinR 2556359..2556694 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP56_RS13700 (NRS6131_13650) tasA 2556786..2557571 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  KJP56_RS13705 (NRS6131_13655) sipW 2557636..2558208 (-) 573 WP_134991456.1 signal peptidase I -
  KJP56_RS13710 (NRS6131_13660) tapA 2558192..2558953 (-) 762 WP_032726156.1 amyloid fiber anchoring/assembly protein TapA -
  KJP56_RS13715 (NRS6131_13665) yqzG 2559225..2559551 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP56_RS13720 (NRS6131_13670) spoIIT 2559593..2559772 (-) 180 WP_014480252.1 YqzE family protein -
  KJP56_RS13725 (NRS6131_13675) comGG 2559844..2560218 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  KJP56_RS13730 (NRS6131_13680) comGF 2560219..2560602 (-) 384 WP_101502451.1 ComG operon protein ComGF Machinery gene
  KJP56_RS13735 (NRS6131_13685) comGE 2560628..2560975 (-) 348 WP_080529537.1 ComG operon protein 5 Machinery gene
  KJP56_RS13740 (NRS6131_13690) comGD 2560959..2561390 (-) 432 WP_101502452.1 comG operon protein ComGD Machinery gene
  KJP56_RS13745 (NRS6131_13695) comGC 2561380..2561676 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KJP56_RS13750 (NRS6131_13700) comGB 2561690..2562727 (-) 1038 WP_153529795.1 comG operon protein ComGB Machinery gene
  KJP56_RS13755 (NRS6131_13705) comGA 2562714..2563784 (-) 1071 WP_153529796.1 competence protein ComGA Machinery gene
  KJP56_RS13760 - 2563996..2564121 (-) 126 WP_003230155.1 hypothetical protein -
  KJP56_RS13765 (NRS6131_13715) corA 2564187..2565140 (-) 954 WP_072173930.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16134.69 Da        Isoelectric Point: 9.6750

>NTDB_id=1158074 KJP56_RS13740 WP_101502452.1 2560959..2561390(-) (comGD) [Bacillus subtilis isolate NRS6131]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVIGHDAYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1158074 KJP56_RS13740 WP_101502452.1 2560959..2561390(-) (comGD) [Bacillus subtilis isolate NRS6131]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAATAGGCCATGACGCTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

95.804

100

0.958

Multiple sequence alignment