Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KJP56_RS13510 Genome accession   NZ_OX419652
Coordinates   2524262..2525992 (-) Length   576 a.a.
NCBI ID   WP_038829742.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2519262..2530992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS13485 (NRS6131_13435) - 2519315..2519611 (-) 297 WP_014480225.1 hypothetical protein -
  KJP56_RS13490 - 2519919..2520071 (+) 153 WP_122060483.1 hypothetical protein -
  KJP56_RS13495 (NRS6131_13440) yqiG 2520144..2521262 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  KJP56_RS13500 (NRS6131_13450) spo0A 2521728..2522531 (-) 804 WP_032726121.1 sporulation transcription factor Spo0A Regulator
  KJP56_RS13505 (NRS6131_13455) spoIVB 2522807..2524087 (-) 1281 WP_032726122.1 SpoIVB peptidase -
  KJP56_RS13510 (NRS6131_13460) recN 2524262..2525992 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  KJP56_RS13515 (NRS6131_13465) argR 2526029..2526478 (-) 450 WP_015384067.1 arginine repressor ArgR -
  KJP56_RS13520 (NRS6131_13470) yqxC 2526576..2527421 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  KJP56_RS13525 (NRS6131_13475) dxs 2527418..2529319 (-) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KJP56_RS13530 (NRS6131_13480) ispA 2529494..2530384 (-) 891 WP_032726127.1 polyprenyl synthetase family protein -
  KJP56_RS13535 (NRS6131_13485) xseB 2530374..2530628 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64522.38 Da        Isoelectric Point: 4.7697

>NTDB_id=1158068 KJP56_RS13510 WP_038829742.1 2524262..2525992(-) (recN) [Bacillus subtilis isolate NRS6131]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1158068 KJP56_RS13510 WP_038829742.1 2524262..2525992(-) (recN) [Bacillus subtilis isolate NRS6131]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTCTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGATGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCTGAACGCCTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAACTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTACTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTTA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.653

100

0.997

Multiple sequence alignment