Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KJP56_RS13500 Genome accession   NZ_OX419652
Coordinates   2521728..2522531 (-) Length   267 a.a.
NCBI ID   WP_032726121.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516728..2527531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS13475 (NRS6131_13425) glpQ 2517865..2518596 (-) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -
  KJP56_RS13480 (NRS6131_13430) yqiI 2518675..2519295 (-) 621 WP_077671425.1 N-acetylmuramoyl-L-alanine amidase -
  KJP56_RS13485 (NRS6131_13435) - 2519315..2519611 (-) 297 WP_014480225.1 hypothetical protein -
  KJP56_RS13490 - 2519919..2520071 (+) 153 WP_122060483.1 hypothetical protein -
  KJP56_RS13495 (NRS6131_13440) yqiG 2520144..2521262 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  KJP56_RS13500 (NRS6131_13450) spo0A 2521728..2522531 (-) 804 WP_032726121.1 sporulation transcription factor Spo0A Regulator
  KJP56_RS13505 (NRS6131_13455) spoIVB 2522807..2524087 (-) 1281 WP_032726122.1 SpoIVB peptidase -
  KJP56_RS13510 (NRS6131_13460) recN 2524262..2525992 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  KJP56_RS13515 (NRS6131_13465) argR 2526029..2526478 (-) 450 WP_015384067.1 arginine repressor ArgR -
  KJP56_RS13520 (NRS6131_13470) yqxC 2526576..2527421 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29677.16 Da        Isoelectric Point: 6.3909

>NTDB_id=1158067 KJP56_RS13500 WP_032726121.1 2521728..2522531(-) (spo0A) [Bacillus subtilis isolate NRS6131]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1158067 KJP56_RS13500 WP_032726121.1 2521728..2522531(-) (spo0A) [Bacillus subtilis isolate NRS6131]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
TGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment