Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KJP60_RS13765 Genome accession   NZ_OX419580
Coordinates   2605777..2606208 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6116     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2600777..2611208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP60_RS13715 (NRS6116_13740) sinI 2600971..2601144 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP60_RS13720 (NRS6116_13745) sinR 2601178..2601513 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP60_RS13725 (NRS6116_13750) tasA 2601606..2602391 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  KJP60_RS13730 (NRS6116_13755) sipW 2602455..2603027 (-) 573 WP_003246088.1 signal peptidase I -
  KJP60_RS13735 (NRS6116_13760) tapA 2603011..2603772 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  KJP60_RS13740 (NRS6116_13765) yqzG 2604044..2604370 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP60_RS13745 (NRS6116_13770) spoIIT 2604412..2604591 (-) 180 WP_003230176.1 YqzE family protein -
  KJP60_RS13750 (NRS6116_13775) comGG 2604662..2605036 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  KJP60_RS13755 (NRS6116_13780) comGF 2605037..2605420 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  KJP60_RS13760 (NRS6116_13785) comGE 2605446..2605793 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  KJP60_RS13765 (NRS6116_13790) comGD 2605777..2606208 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  KJP60_RS13770 (NRS6116_13795) comGC 2606198..2606494 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KJP60_RS13775 (NRS6116_13800) comGB 2606508..2607545 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  KJP60_RS13780 (NRS6116_13805) comGA 2607532..2608602 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KJP60_RS13785 (NRS6116_13815) corA 2609014..2609967 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=1157993 KJP60_RS13765 WP_004398628.1 2605777..2606208(-) (comGD) [Bacillus subtilis isolate NRS6116]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1157993 KJP60_RS13765 WP_004398628.1 2605777..2606208(-) (comGD) [Bacillus subtilis isolate NRS6116]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment