Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP45_RS15685 Genome accession   NZ_OX419578
Coordinates   3036645..3037289 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6128     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031645..3042289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS15650 (NRS6128_15510) mrpB 3032837..3033268 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KJP45_RS15655 (NRS6128_15515) mrpC 3033268..3033609 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP45_RS15660 (NRS6128_15520) mrpD 3033602..3035083 (+) 1482 WP_213414935.1 Na+/H+ antiporter subunit D -
  KJP45_RS15665 (NRS6128_15525) mrpE 3035089..3035565 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KJP45_RS15670 (NRS6128_15530) mrpF 3035565..3035849 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP45_RS15675 (NRS6128_15535) mnhG 3035833..3036207 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  KJP45_RS15680 (NRS6128_15540) yuxO 3036246..3036626 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  KJP45_RS15685 (NRS6128_15545) comA 3036645..3037289 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP45_RS15690 (NRS6128_15550) comP 3037370..3039667 (-) 2298 WP_153912412.1 histidine kinase Regulator
  KJP45_RS15695 (NRS6128_15555) comX 3039675..3039836 (-) 162 WP_049140565.1 competence pheromone ComX -
  KJP45_RS15700 (NRS6128_15560) - 3039851..3040711 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  KJP45_RS15705 (NRS6128_15565) degQ 3040896..3041036 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP45_RS15710 - 3041258..3041383 (+) 126 WP_121549029.1 hypothetical protein -
  KJP45_RS15715 (NRS6128_15570) - 3041497..3041865 (+) 369 WP_213414936.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1157848 KJP45_RS15685 WP_003220716.1 3036645..3037289(-) (comA) [Bacillus subtilis isolate NRS6128]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1157848 KJP45_RS15685 WP_003220716.1 3036645..3037289(-) (comA) [Bacillus subtilis isolate NRS6128]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment