Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP47_RS19090 Genome accession   NZ_OX419577
Coordinates   3570491..3571180 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6120     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3565491..3576180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS19055 (NRS6120_19615) flgN 3565686..3566168 (-) 483 WP_003227999.1 flagellar protein FlgN -
  KJP47_RS19060 (NRS6120_19620) flgM 3566184..3566450 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP47_RS19065 (NRS6120_19625) yvyF 3566531..3566950 (-) 420 WP_213382304.1 TIGR03826 family flagellar region protein -
  KJP47_RS19070 (NRS6120_19630) comFC 3567024..3567746 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  KJP47_RS19075 comFB 3567710..3567990 (-) 281 Protein_3697 late competence development ComFB family protein -
  KJP47_RS19080 (NRS6120_19640) comFA 3568050..3569441 (-) 1392 WP_213382303.1 ATP-dependent helicase ComFA Machinery gene
  KJP47_RS19085 (NRS6120_19645) fakBA 3569548..3570393 (-) 846 WP_017695310.1 DegV family protein -
  KJP47_RS19090 (NRS6120_19650) degU 3570491..3571180 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP47_RS19095 (NRS6120_19655) degS 3571263..3572420 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  KJP47_RS19100 (NRS6120_19660) yvyE 3572637..3573290 (+) 654 WP_003227979.1 YigZ family protein -
  KJP47_RS19105 (NRS6120_19665) tagV 3573290..3574465 (+) 1176 WP_213382300.1 LCP family protein -
  KJP47_RS19110 (NRS6120_19670) tagO 3574538..3575614 (-) 1077 WP_213382298.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1157777 KJP47_RS19090 WP_003219701.1 3570491..3571180(-) (degU) [Bacillus subtilis isolate NRS6120]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1157777 KJP47_RS19090 WP_003219701.1 3570491..3571180(-) (degU) [Bacillus subtilis isolate NRS6120]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGATGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCAGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment