Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KJP47_RS19080 Genome accession   NZ_OX419577
Coordinates   3568050..3569441 (-) Length   463 a.a.
NCBI ID   WP_213382303.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6120     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3563050..3574441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS19045 (NRS6120_19605) flgL 3563237..3564133 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  KJP47_RS19050 (NRS6120_19610) flgK 3564144..3565667 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  KJP47_RS19055 (NRS6120_19615) flgN 3565686..3566168 (-) 483 WP_003227999.1 flagellar protein FlgN -
  KJP47_RS19060 (NRS6120_19620) flgM 3566184..3566450 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP47_RS19065 (NRS6120_19625) yvyF 3566531..3566950 (-) 420 WP_213382304.1 TIGR03826 family flagellar region protein -
  KJP47_RS19070 (NRS6120_19630) comFC 3567024..3567746 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  KJP47_RS19075 comFB 3567710..3567990 (-) 281 Protein_3697 late competence development ComFB family protein -
  KJP47_RS19080 (NRS6120_19640) comFA 3568050..3569441 (-) 1392 WP_213382303.1 ATP-dependent helicase ComFA Machinery gene
  KJP47_RS19085 (NRS6120_19645) fakBA 3569548..3570393 (-) 846 WP_017695310.1 DegV family protein -
  KJP47_RS19090 (NRS6120_19650) degU 3570491..3571180 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP47_RS19095 (NRS6120_19655) degS 3571263..3572420 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  KJP47_RS19100 (NRS6120_19660) yvyE 3572637..3573290 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52423.31 Da        Isoelectric Point: 9.6536

>NTDB_id=1157776 KJP47_RS19080 WP_213382303.1 3568050..3569441(-) (comFA) [Bacillus subtilis isolate NRS6120]
MNVPVEKNSSFSKELQQNLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCIMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEEVLIWAVCGAGKTEILFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGSPVFLFVPSVSILEKAAACFKGVDCRAESVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1157776 KJP47_RS19080 WP_213382303.1 3568050..3569441(-) (comFA) [Bacillus subtilis isolate NRS6120]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGAACCTTCGAAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAAATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTCTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCGATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGGTCCTCATCTGGGCAGTTTGCGGCGCTGGAAAAACAGAAATACTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATAGCAACACCTCGCACAGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAAGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTAATGATCGTTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATTCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGGAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGTCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTGATTGCCGAGCCGAATCTGTGCACGCAGAAGACAAGCATAGGAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCATTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

96.76

100

0.968

Multiple sequence alignment